View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_high_62 (Length: 234)
Name: NF18453_high_62
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_high_62 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1238394 - 1238173
Alignment:
| Q |
1 |
ttagattgcgcatattatggcacgtcatggctgtgaaaggcgtacaaaggtcgagttgatttctatgatacaccgtgtgcttaatcgatttgtcaccatt |
100 |
Q |
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| T |
1238394 |
ttagattgcgcatattatggcacggcatggctgtgaaaggcgtacaaaggtcgagttgatttctatgatacaccgtgtgcttaatcgatttgtcaccatt |
1238295 |
T |
|
| Q |
101 |
gatttttaccaaacagcgaggaattggattgatcatcggtaagattaattcattatctctcttttctaatcaattgatttaccgttttgttctttaattg |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1238294 |
gatttttaccaaacagtgaggaattggattgatcatcggtaagattaattcattatctctcttttctaatcaattgatttaccgttttgttctttaattg |
1238195 |
T |
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| Q |
201 |
tttattaatgtcatgtgttctt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
1238194 |
tttattaatgtcatgtgttctt |
1238173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 1174320 - 1174516
Alignment:
| Q |
1 |
ttagattgcgcatattatggcacgtcatggctgtgaaaggcgtacaaaggtcgagttgatttctatgatacaccgtgtgcttaatcgatttgtcaccatt |
100 |
Q |
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| T |
1174320 |
ttagattgcacatattatggctcatcacggttgtgaaaggcggtcagagttctttctgatttgtatgatagaccatgtgcttaattgatttgtcaccatt |
1174419 |
T |
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| Q |
101 |
gatttttaccaaacagcgaggaattggattgatcatcggtaagattaattcattatctctcttttctaatcaattgatttaccgttttgttctttaa |
197 |
Q |
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| T |
1174420 |
gatttttaccaaacagcgatgaattggatgaatcgacggtaagattaattcattatctctcttttttgatcgattgatttatcgttttgttctttaa |
1174516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 10174152 - 10173935
Alignment:
| Q |
6 |
ttgcgcatattatggcacgtcatggctgtgaaaggcgtacaaaggtcgagttgatttctatgatacaccgtgtgcttaatcgatttgtcaccattgattt |
105 |
Q |
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|||||||||||||||| || ||||| ||||| | ||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||| |
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| T |
10174152 |
ttgcgcatattatggctcggcatggagttgaaatgtgtacaaaggtcgagttgatttctatgatagactgtgtgcttaatctatttgtcctcattgattt |
10174053 |
T |
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| Q |
106 |
ttaccaaacagcgaggaattggattgatcatcggtaagattaattcattatctctc-ttttctaatcaattgatttaccgttttgttctttaattgttta |
204 |
Q |
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|||| |||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||||| |||||||||| |||| |||||||||||||| | |
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| T |
10174052 |
ttacgaaacagtaaggaattggattagtcatcggtaagattaagtcattatctctctttttctaatacattgatttactgtttagttctttaattgttca |
10173953 |
T |
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| Q |
205 |
ttaatgtcatgtgttctt |
222 |
Q |
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| T |
10173952 |
tcaatgtcatctgttctt |
10173935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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