View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18453_high_64 (Length: 228)

Name: NF18453_high_64
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18453_high_64
NF18453_high_64
[»] chr3 (2 HSPs)
chr3 (119-217)||(26492514-26492612)
chr3 (1-88)||(26492396-26492483)
[»] chr1 (1 HSPs)
chr1 (18-60)||(37747842-37747884)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 26492514 - 26492612
Alignment:
Q  119 ccagatcagaaaatgtgtgattcatttgctatatttgttgcctttgaataccttctttcggaactgagcttgcatattttttgaccagtctagtgatga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26492514 ccagatcagaaaatgtgtgattcatttgctatatttgttgcctttgaataccttctttcggaactgagcttgcatattttttgaccagtctagtgatga 26492612  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26492396 - 26492483
Alignment:
Q  1 ttgtgaatggcttattctcttcacaataaccaataagattcacaaaattcttgtggttcaaccttgataacatctcaatctgaaagac 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26492396 ttgtgaatggcttattctcttcacaataaccaataagattcacaaaattcttgtggttcaaccttgataacatctcaatctgaaagac 26492483  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 37747842 - 37747884
Alignment:
Q  18 tcttcacaataaccaataagattcacaaaattcttgtggttca 60  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  37747842 tcttcacaatatccaataagattgacaaaattcttgtggttca 37747884  T

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