View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18453_high_66 (Length: 214)

Name: NF18453_high_66
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18453_high_66
NF18453_high_66
[»] chr1 (4 HSPs)
chr1 (13-197)||(2608359-2608543)
chr1 (13-179)||(2592069-2592235)
chr1 (13-179)||(2578320-2578486)
chr1 (13-179)||(2599823-2599989)
[»] chr3 (2 HSPs)
chr3 (12-137)||(49331276-49331404)
chr3 (12-137)||(49329000-49329128)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 2608359 - 2608543
Alignment:
Q  13 caaaggcaaattgctgcatctaaatcaaccaaaccttgaagcaatgcacaacacttgcttgaagcaggacttccaacaataacattaacaagtcctaaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2608359 caaaggcaaattgctgcatctaaatcaaccaaaccttgaagcaatgcacaacacttgcttgaagcaggacttccaacaataacattaacaagtcctaaaa 2608458  T
Q  113 catcagcacaaacacctagctttaatgtgtcactaggacatttttgtgatgttgaaggagtaggaggtgttgtcgaaggtgttgg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2608459 catcagcacaaacacctagctttaatgtgtcactaggacatttttgtgatgttgaaggagtaggaggtgttgttgaaggtgttgg 2608543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 2592069 - 2592235
Alignment:
Q  13 caaaggcaaattgctgcatctaaatcaaccaaaccttgaagcaatgcacaacacttgcttgaagcaggacttccaacaataacattaacaagtcctaaaa 112  Q
    ||||| |||| |||||| || |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2592069 caaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacacttgcttgaagcaggacttccaacaataacattaacaagtcctagaa 2592168  T
Q  113 catcagcacaaacacctagctttaatgtgtcactaggacatttttgtgatgttgaaggagtaggagg 179  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2592169 catcagcacatacacctagctttaatgtgtcactaggacatttttgtgatgttgaaggagttggagg 2592235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 2578320 - 2578486
Alignment:
Q  13 caaaggcaaattgctgcatctaaatcaaccaaaccttgaagcaatgcacaacacttgcttgaagcaggacttccaacaataacattaacaagtcctaaaa 112  Q
    ||||| |||| |||||| || |||||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  2578320 caaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacagttgcttgaagcaggacttccaacaataacattaacaagtcctagaa 2578419  T
Q  113 catcagcacaaacacctagctttaatgtgtcactaggacatttttgtgatgttgaaggagtaggagg 179  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  2578420 catcagcacatacacctagctttaatgtgtcactagggcatttttgtgctgttgaaggagtaggagg 2578486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 2599823 - 2599989
Alignment:
Q  13 caaaggcaaattgctgcatctaaatcaaccaaaccttgaagcaatgcacaacacttgcttgaagcaggacttccaacaataacattaacaagtcctaaaa 112  Q
    ||||| |||| |||||| || |||||| |||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| ||    
T  2599823 caaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacaattgcttgaagcaggaattccaacaataacattaacaagtcctagaa 2599922  T
Q  113 catcagcacaaacacctagctttaatgtgtcactaggacatttttgtgatgttgaaggagtaggagg 179  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  2599923 catcagcacatacacctagctttaatgtgtcactagggcatttttgtgctgttgaaggagtaggagg 2599989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 49331404 - 49331276
Alignment:
Q  12 gcaaaggcaaattgctgcatctaaatcaaccaaaccttgaagcaatgcacaacacttgct---tgaagcaggacttccaacaataacattaacaagtcct 108  Q
    |||||| |||| ||| ||||| |||||| |||||||||  |  | ||||||||| || ||   |||||||||| ||||||||| ||||||||| ||||||    
T  49331404 gcaaagacaaagtgcagcatccaaatcagccaaacctttgattattgcacaacaattactacctgaagcaggatttccaacaacaacattaaccagtcct 49331305  T
Q  109 aaaacatcagcacaaacacctagctttaa 137  Q
    ||||||||||||||||| |||| ||||||    
T  49331304 aaaacatcagcacaaacccctaactttaa 49331276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 49329128 - 49329000
Alignment:
Q  12 gcaaaggcaaattgctgcatctaaatcaaccaaaccttgaagcaatgcacaacacttgct---tgaagcaggacttccaacaataacattaacaagtcct 108  Q
    |||||| |||| ||| || || |||||| ||||||| | || |||||||||||| || ||   ||||| |||| |||||| || ||||||||| |  |||    
T  49329128 gcaaagacaaagtgcagcctccaaatcagccaaacccttaatcaatgcacaacatttactacctgaaggaggatttccaataacaacattaaccaaccct 49329029  T
Q  109 aaaacatcagcacaaacacctagctttaa 137  Q
    |||| |||||||||||| |||||||||||    
T  49329028 aaaagatcagcacaaacccctagctttaa 49329000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University