View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18453_high_8 (Length: 630)

Name: NF18453_high_8
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18453_high_8
NF18453_high_8
[»] chr1 (6 HSPs)
chr1 (230-612)||(35899407-35899789)
chr1 (96-575)||(44612858-44613337)
chr1 (331-575)||(11544103-11544347)
chr1 (31-138)||(11543878-11543985)
chr1 (104-270)||(44794953-44795118)
chr1 (450-490)||(44145653-44145693)
[»] scaffold0061 (1 HSPs)
scaffold0061 (40-575)||(28589-29127)
[»] scaffold0017 (3 HSPs)
scaffold0017 (40-575)||(169665-170203)
scaffold0017 (56-401)||(180929-181274)
scaffold0017 (449-605)||(174541-174697)
[»] chr3 (3 HSPs)
chr3 (105-605)||(26728374-26728874)
chr3 (378-605)||(8342856-8343083)
chr3 (32-133)||(8343253-8343354)
[»] chr5 (1 HSPs)
chr5 (323-493)||(29507186-29507356)


Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 230 - 612
Target Start/End: Complemental strand, 35899789 - 35899407
Alignment:
Q  230 ctagtgttttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagcca 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35899789 ctagtgttttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagcca 35899690  T
Q  330 gttaggaaatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaacccaatcataactaaccttcacagtcagaaagtta 429  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35899689 gttaggaaatctataatttagattgcaagatgctagattcaaatttattaatttaaagggaggaacccagtcataactaaccttcacagtcagaaagtta 35899590  T
Q  430 tgagacaaatatagatcttccaatttggagaggttagtgaaatgagattcagagatgacaccttcaaaaccgtttacgctcaaatccaaatactttaact 529  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35899589 taagacaaatatagatcttccaatttggagaggttagtgaaatgagattcagagatgacaccttcaaaagcgtttacgctcaaatccaaatactttaact 35899490  T
Q  530 ccataattgatccaatgcttgtgggtatttctccaaataatttatttctagcaagatacaacattctcaaagatgataagatt 612  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35899489 ccataattgatccaatgctcgtgggtatttctccaaataatttatttccagcaagatacaacattctcaaagatgataagatt 35899407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 96 - 575
Target Start/End: Complemental strand, 44613337 - 44612858
Alignment:
Q  96 tgctttcaataaaaaagaaggaatgggaccttcaagttgatttacagccaaatgtattattggatgattggtaagattgagttccaaattaggaatcttg 195  Q
    ||||| |||||||||||||||||||| ||||||||  ||||||  |  ||||| ||| || | ||  |||||||||||||||||||||||||||||| ||    
T  44613337 tgcttgcaataaaaaagaaggaatggaaccttcaaactgatttgaactcaaatttatcatagtattgttggtaagattgagttccaaattaggaatcatg 44613238  T
Q  196 ccagtgagattgttgtttgaaatgtctaagtaagctagtgttttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaagga 295  Q
    || |||| |||||||||||||||    | |  | ||||||||| |||||| ||||||||||||  |||| |||||  || |||||| ||||||||||||     
T  44613237 cctgtgatattgttgtttgaaattgacatgccaactagtgtttgcaatttaccccaaaaccaaagaggtgttggagatatattactcacatttgaaaggg 44613138  T
Q  296 taagataggataaggagttttgtgtttgaagccagttaggaaatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaac 395  Q
     || |  ||||||    ||||||||||||||||| |||||||||||| |||| | ||| ||||||| ||    |||  ||| ||||| ||| || |||||    
T  44613137 aaataatggataattcattttgtgtttgaagccaattaggaaatctagaattcatattacaagatgataagcccaatgttaataattgaaaagggggaac 44613038  T
Q  396 ccaatcataactaaccttcacagtcagaaagttatgagacaaatatagatcttccaatttggagaggttagtgaaatgagattcagagatgacaccttca 495  Q
    |||||||| ||||||||||| |||||   |||| | |||||| | ||| | ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  44613037 ccaatcattactaaccttcatagtcaacgagttgtcagacaagtctagtttttccaatttggagaggttagtgaaatgggattcagagatgataccttca 44612938  T
Q  496 aaaccgtttacgctcaaatccaaatactttaactccataattgatccaatgcttgtgggtatttctccaaataatttatt 575  Q
    |||  |||| ||| ||  | |||||||| ||||||  ||| |||||| ||||| | |||||||||||||  |||||||||    
T  44612937 aaagagtttccgcccaggtacaaatactgtaactcggtaagtgatccgatgctcgcgggtatttctccagttaatttatt 44612858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 331 - 575
Target Start/End: Original strand, 11544103 - 11544347
Alignment:
Q  331 ttaggaaatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaacccaatcataactaaccttcacagtcagaaagttat 430  Q
    ||||||||| |  |||| ||||| ||||||||||||  ||||| |  ||||| ||| |||||||||||||    |||||| ||||||||  | ||||| |    
T  11544103 ttaggaaatgttgaattgagattgcaagatgctagaaacaaatattgtaattgaaaaggaggaacccaatttgcactaactttcacagttggtaagttct 11544202  T
Q  431 gagacaaatatagatcttccaatttggagaggttagtgaaatgagattcagagatgacaccttcaaaaccgtttacgctcaaatccaaatactttaactc 530  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||  |  |||||||||  |||| ||| || || ||||   | ||||||    
T  11544203 gagacaaatctagttcttccaatttggagaggttagtgaaatgggattcagagacaatgccttcaaaagagtttccgcccagattcaaaatttctaactc 11544302  T
Q  531 cataattgatccaatgcttgtgggtatttctccaaataatttatt 575  Q
      ||| |||||||||||| |||||||||||||||| ||| |||||    
T  11544303 ggtaagtgatccaatgctcgtgggtatttctccaattaaattatt 11544347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 11543878 - 11543985
Alignment:
Q  31 ttaattttgttgcatagaaagggaactaagtctgaaaatttattttcagaaagttgtaatgctgttgctttcaataaaaaagaaggaatgggaccttcaa 130  Q
    ||||| ||| ||||||||||||  ||||| |||||||||||||| |  || || || ||||||  ||||| |||||||| ||||||||||| ||||||||    
T  11543878 ttaatattgctgcatagaaaggacactaaatctgaaaatttattattggagagatgcaatgctactgcttgcaataaaagagaaggaatggaaccttcaa 11543977  T
Q  131 gttgattt 138  Q
    ||||||||    
T  11543978 gttgattt 11543985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 104 - 270
Target Start/End: Original strand, 44794953 - 44795118
Alignment:
Q  104 ataaaaaagaaggaatgggaccttcaagttgatttacagccaaatgtattattggatgattggtaagattgagttccaaattaggaatcttgccagtgag 203  Q
    ||||||| |||||||||| ||||||||  ||||||  |  ||||| |||||  |||   |||||||||||||||||||||||||||||| |||| ||||     
T  44794953 ataaaaaggaaggaatggaaccttcaaactgatttgaactcaaatctattacaggaattttggtaagattgagttccaaattaggaatcatgcctgtgat 44795052  T
Q  204 attgttgtttgaaatgtctaagtaagctagtgttttcaatttcccccaaaaccaagtaggtattgga 270  Q
    |||||| ||||||||    | |  | ||||||||| |||||| ||||||||||||  ||||||||||    
T  44795053 attgtt-tttgaaattgacatgccaactagtgtttgcaatttaccccaaaaccaaagaggtattgga 44795118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 450 - 490
Target Start/End: Complemental strand, 44145693 - 44145653
Alignment:
Q  450 caatttggagaggttagtgaaatgagattcagagatgacac 490  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  44145693 caatttggagaggttagtgaaatgggattcagagacgacac 44145653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 125; Significance: 5e-64; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 40 - 575
Target Start/End: Original strand, 28589 - 29127
Alignment:
Q  40 ttgcatagaaagggaactaagtctgaaaatttattttcagaaagttgtaatgctgttgctttcaataaaaaagaaggaatgggaccttcaagttgattta 139  Q
    ||||||||||||| |||||| |||||||||||||| |  ||||| | || |||| |||| | | | || ||||||||||||| ||||| ||  ||||||     
T  28589 ttgcatagaaaggaaactaaatctgaaaatttattattggaaagatatagtgctcttgcctgcgacaagaaagaaggaatggaacctttaaactgatttg 28688  T
Q  140 cagccaaatgtattattggatgattggta---agattgagttccaaattaggaatcttgccagtgagattgttgtttgaaatgtctaagtaagctagtgt 236  Q
     |  ||||| ||| |  ||||  ||||||   ||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||  || || |||    
T  28689 aaatcaaatctataaaaggattgttggtaccaagattgagttctaaattaggaatcatgccagtaagattgttgtttgaaatgtccaagctagttattgt 28788  T
Q  237 tttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagccagttagga 336  Q
    || |||||| |||||||||||| |||||||||||  || |||||||||||||||||||  ||||  ||||||    ||||||||||| ||||| ||||||    
T  28789 ttgcaattttccccaaaaccaaataggtattggagatatattactgacatttgaaagggaaagagtggataattcattttgtgtttggagccaattagga 28888  T
Q  337 aatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaacccaatcataactaaccttcacagtcagaaagttatgagaca 436  Q
    ||| || |||| | ||| |||  || || |  ||| | || ||||| ||| |||||||||||||||| |||||||| || |||||   |||| |  ||||    
T  28889 aatatagaattcatattacaatttgataaacccaattctagtaattgaaaaggaggaacccaatcattactaacctccatagtcaatgagttgtcggaca 28988  T
Q  437 aatatagatcttccaatttggagaggttagtgaaatgagattcagagatgacaccttcaaaaccgtttacgctcaaatccaaatactttaactccataat 536  Q
    |  ||||   || |||||||||||||||||||||||| |||||||||| |||||||||||||  ||||  |||||  | ||||  |||||||||  |||     
T  28989 accatagccttttcaatttggagaggttagtgaaatgggattcagagacgacaccttcaaaagagtttcggctcaggtacaaactctttaactctgtaag 29088  T
Q  537 tgatccaatgcttgtgggtatttctccaaataatttatt 575  Q
    |||||| ||||| |||||||||||||||| |||||||||    
T  29089 tgatccgatgctcgtgggtatttctccaattaatttatt 29127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 125; Significance: 5e-64; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 40 - 575
Target Start/End: Complemental strand, 170203 - 169665
Alignment:
Q  40 ttgcatagaaagggaactaagtctgaaaatttattttcagaaagttgtaatgctgttgctttcaataaaaaagaaggaatgggaccttcaagttgattta 139  Q
    ||||||||||||| |||||| |||||||||||||| |  ||||| | || |||| |||| | | | || ||||||||||||| ||||| ||  ||||||     
T  170203 ttgcatagaaaggaaactaaatctgaaaatttattattggaaagatatagtgctcttgcctgcgacaagaaagaaggaatggaacctttaaactgatttg 170104  T
Q  140 cagccaaatgtattattggatgattggta---agattgagttccaaattaggaatcttgccagtgagattgttgtttgaaatgtctaagtaagctagtgt 236  Q
     |  ||||| ||| |  ||||  ||||||   ||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||  || || |||    
T  170103 aaatcaaatctataaaaggattgttggtaccaagattgagttctaaattaggaatcatgccagtaagattgttgtttgaaatgtccaagctagttattgt 170004  T
Q  237 tttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagccagttagga 336  Q
    || |||||| |||||||||||| |||||||||||  || |||||||||||||||||||  ||||  ||||||    ||||||||||| ||||| ||||||    
T  170003 ttgcaattttccccaaaaccaaataggtattggagatatattactgacatttgaaagggaaagagtggataattcattttgtgtttggagccaattagga 169904  T
Q  337 aatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaacccaatcataactaaccttcacagtcagaaagttatgagaca 436  Q
    ||| || |||| | ||| |||  || || |  ||| | || ||||| ||| |||||||||||||||| |||||||| || |||||   |||| |  ||||    
T  169903 aatatagaattcatattacaatttgataaacccaattctagtaattgaaaaggaggaacccaatcattactaacctccatagtcaatgagttgtcggaca 169804  T
Q  437 aatatagatcttccaatttggagaggttagtgaaatgagattcagagatgacaccttcaaaaccgtttacgctcaaatccaaatactttaactccataat 536  Q
    |  ||||   || |||||||||||||||||||||||| |||||||||| |||||||||||||  ||||  |||||  | ||||  |||||||||  |||     
T  169803 accatagccttttcaatttggagaggttagtgaaatgggattcagagacgacaccttcaaaagagtttcggctcaggtacaaactctttaactctgtaag 169704  T
Q  537 tgatccaatgcttgtgggtatttctccaaataatttatt 575  Q
    |||||| ||||| |||||||||||||||| |||||||||    
T  169703 tgatccgatgctcgtgggtatttctccaattaatttatt 169665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 56 - 401
Target Start/End: Complemental strand, 181274 - 180929
Alignment:
Q  56 ctaagtctgaaaatttattttcagaaagttgtaatgctgttgctttcaataaaaaagaaggaatgggaccttcaagttgatttacagccaaatgtattat 155  Q
    |||| |||||||||||||| || |||||||||| ||||  ||||| |||||||||  ||||||||  |||||||| |||||||| |  ||||| |||       
T  181274 ctaaatctgaaaatttattatcggaaagttgtactgctcctgcttgcaataaaaataaaggaatgcaaccttcaaattgatttaaactcaaatctatatg 181175  T
Q  156 tggatgattggtaagattgagttccaaattaggaatcttgccagtgagattgttgtttgaaatgtctaagtaagctagtgttttcaatttcccccaaaac 255  Q
     |||   ||||| || |||||||||||||||||| || |||| || |||||||||||||||||||| | || |  |||||||| ||||||  ||||||||    
T  181174 aggactgttggtgagtttgagttccaaattaggattcatgccggtcagattgttgtttgaaatgtccatgtcacatagtgtttgcaatttttcccaaaac 181075  T
Q  256 caagtaggtattggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagccagttaggaaatctataatttagatttc 355  Q
    ||   ||||||||||  |||||||||||||| |||||||  |||||||  ||||   |||||||||| || ||| | |||||||||| |||| ||||| |    
T  181074 cagtgaggtattggagatagattactgacatctgaaaggtaaagatagtgtaagtgattttgtgttttaaaccaatcaggaaatctagaattcagattac 180975  T
Q  356 aagatgctagattcaaatttattaatttaaagggaggaacccaatc 401  Q
    |||||| ||||  |||| ||  ||||| ||| ||||||| ||||||    
T  180974 aagatgttagacccaaactttctaattgaaaaggaggaaaccaatc 180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 449 - 605
Target Start/End: Complemental strand, 174697 - 174541
Alignment:
Q  449 ccaatttggagaggttagtgaaatgagattcagagatgacaccttcaaaaccgtttacgctcaaatccaaatactttaactccataattgatccaatgct 548  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||||||||  ||||  ||||| |  |||   || ||||||||| |  ||||| |||||    
T  174697 ccaatttggagaggttagtgaaatgcgattcagagacaacaccttcaaaagagtttctgctcagactcaatgtctgtaactccatgagcgatccgatgct 174598  T
Q  549 tgtgggtatttctccaaataatttatttctagcaagatacaacattctcaaagatga 605  Q
     ||| |||||||||||| |||||||||   |||||||||||||  ||||||||||||    
T  174597 agtgtgtatttctccaattaatttattatcagcaagatacaactgtctcaaagatga 174541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 6e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 105 - 605
Target Start/End: Complemental strand, 26728874 - 26728374
Alignment:
Q  105 taaaaaagaaggaatgggaccttcaagttgatttacagccaaatgtattattggatgattggtaagattgagttccaaattaggaatcttgccagtgaga 204  Q
    ||||||||||||||||| |||||| |||||||||  |  ||||| || |    ||| || ||| ||||||||||||| ||  |||||| | ||| |||||    
T  26728874 taaaaaagaaggaatggaaccttcgagttgatttgaactcaaatctagttcaagataatgggttagattgagttccatatctggaatcctaccactgaga 26728775  T
Q  205 ttgttgtttgaaatgtctaagtaagctagtgttttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaaggataagatagg 304  Q
    ||||||||||||||||  ||     ||||||||| |||||| |||||||||||   ||||||| |  | | |||||  ||||||||||||  ||| |  |    
T  26728774 ttgttgtttgaaatgttcaatagttctagtgtttgcaattttccccaaaaccattgaggtatttgcgccaaattacctacatttgaaagggaaagctcag 26728675  T
Q  305 ataaggagttttgtgtttgaagccagttaggaaatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaacccaatcata 404  Q
    |||||  |||||||||||| ||||| |||||||||||| |||| || || ||||| | ||||  |||||   |||||| ||| ||||||||||||| ||     
T  26728674 ataagtcgttttgtgtttggagccaattaggaaatctagaattcaggttgcaagacgttagacgcaaataacttaattgaaacggaggaacccaattatc 26728575  T
Q  405 actaaccttcacagtcagaaagttatgagacaaatatagatcttccaatttggagaggttagtgaaatgagattcagagatgacaccttcaaaaccgttt 504  Q
    ||||| ||||||| |||  || || | |||||||| ||| ||| ||||||  ||||||||||||||||| |||||||||| |||||||||||||  ||||    
T  26728574 actaatcttcacattcaacaaattgtaagacaaatctaggtctaccaattctgagaggttagtgaaatgggattcagagacgacaccttcaaaagagttt 26728475  T
Q  505 acgctcaaatccaaatactttaactccataattgatccaatgcttgtgggtatttctccaaataatttatttctagcaagatacaacattctcaaagatg 604  Q
    || | ||  ||||||  || ||| ||| ||| |||||| |||||||  |||||||||||| |||| ||||| | |  |||| |||||  |||||||||||    
T  26728474 actcccaggtccaaaatctctaaatccgtaagtgatcccatgcttgcaggtatttctccacataacttattgccattaagagacaaccgtctcaaagatg 26728375  T
Q  605 a 605  Q
    |    
T  26728374 a 26728374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 378 - 605
Target Start/End: Complemental strand, 8343083 - 8342856
Alignment:
Q  378 taatttaaagggaggaacccaatcataactaaccttcacagtcagaaagttatgagacaaatatagatcttccaatttggagaggttagtgaaatgagat 477  Q
    ||||| ||| ||||||||||||| |  |||||||||||||  ||  ||||||| |||||| | ||| |||| |||||| |||||||| ||||||||||||    
T  8343083 taattgaaaaggaggaacccaattagtactaaccttcacaaacaataagttatcagacaactgtagttctttcaattttgagaggtttgtgaaatgagat 8342984  T
Q  478 tcagagatgacaccttcaaaaccgtttacgctcaaatccaaatactttaactccataattgatccaatgcttgtgggtatttctccaaataatttatttc 577  Q
    ||||||| |||||| ||||||  ||||  ||| |    ||||| ||  |||| | ||| |||||| ||||| |||||||||||||||| || ||||||      
T  8342983 tcagagacgacaccatcaaaagagtttctgcttaggatcaaattctccaacttcgtaagtgatccgatgctcgtgggtatttctccaattagtttattgt 8342884  T
Q  578 tagcaagatacaacattctcaaagatga 605  Q
     |  ||||||||||| |||||| |||||    
T  8342883 cataaagatacaacactctcaaggatga 8342856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 8343354 - 8343253
Alignment:
Q  32 taattttgttgcatagaaagggaactaagtctgaaaatttattttcagaaagttgtaatgctgttgctttcaataaaaaagaaggaatgggaccttcaag 131  Q
    |||||||| ||||||| |||| |||||  |||||||||||||| |  || || || ||||||  ||||| ||||||||  || ||||||| |||||||||    
T  8343354 taattttgctgcatagtaaggaaactatatctgaaaatttattattggagagatgcaatgctactgcttgcaataaaagtgagggaatggaaccttcaag 8343255  T
Q  132 tt 133  Q
    ||    
T  8343254 tt 8343253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 323 - 493
Target Start/End: Original strand, 29507186 - 29507356
Alignment:
Q  323 gaagccagttaggaaatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaacccaatcataactaaccttcacagtcag 422  Q
    ||||||| ||||||||  || | || ||||| |||||||||||   ||||| | |||||| ||| || ||||||||||||  |||||||||||||||||     
T  29507186 gaagccaattaggaaaggtagagttgagattacaagatgctagtaacaaatattttaattgaaaaggcggaacccaatcagtactaaccttcacagtcaa 29507285  T
Q  423 aaagttatgagacaaatatagatcttccaatttggagaggttagtgaaatgagattcagagatgacacctt 493  Q
     | ||||  |||||| | |||  ||   |||||||||| ||||||||||||||||||||||| ||||||||    
T  29507286 caggttagaagacaactgtaggcctagtaatttggagaagttagtgaaatgagattcagagaggacacctt 29507356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University