View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_high_9 (Length: 606)
Name: NF18453_high_9
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 20 - 597
Target Start/End: Original strand, 46773116 - 46773692
Alignment:
| Q |
20 |
gaacgccatacctgaaatttgagaaatttgaaatattccctttcagtcactaactagtgttatatgttttgttcgtgattagttttcaagcttggatgtt |
119 |
Q |
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| T |
46773116 |
gaacgccatacctgaaatttgagaaatttgaaatattccctatcagtcactaactagtgttatatgttttgttcgtgattagttttcaagcttggatgtt |
46773215 |
T |
|
| Q |
120 |
gtatttatattgccacatttgcttagtttcttgctttgtttaagcactagtgctgttcattaggttacaaacacattctttttacttcgttagaaaaaca |
219 |
Q |
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| T |
46773216 |
gtatttatattgccacatttgcttagtttcttgctttgtttaagcactagtgctgttcattaggttacaaacacattctttttacttcgttagaaaaaca |
46773315 |
T |
|
| Q |
220 |
cgttagaatatattcgatcctctgtggaaaaattagaaaggcatgttgacgaaaatggactatacacaaacttataaaattatctccttttgtggtaann |
319 |
Q |
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| T |
46773316 |
cgttagaatatattcgatcctctgtggaaaaattagaaatgcatgttgactaaaatggactatacacaaacttataaaattatctccttttgtggtaa-t |
46773414 |
T |
|
| Q |
320 |
nnnnnnnnatggaatctccttttgcggtaatagtgatgttatttgaacacaattttgacatgaacactatataaagtatatttttgctaaatcgacataa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
46773415 |
gtttttttatggaatctccttttgcggtaatagtgatgttatttgaacacaattttgacatgaacactatataaagtatattttggttaaatcgacataa |
46773514 |
T |
|
| Q |
420 |
atttaggaattagctgaaaacgaggctatattgctaacgcgtaagcggtcacatttgcatgttatgaataaattcaatatgagaattttcaaaaaataac |
519 |
Q |
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| T |
46773515 |
atttaggagttagttgaaaacgaggctatattgctaacgcgtaagcggccacatttgcatgttctgaataaatttaatatgagaattttcaaaaaataac |
46773614 |
T |
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| Q |
520 |
atgccataatatctcccctacttttactaaaattgtcggccactctttttgaatcaagcttatttactgacttcatct |
597 |
Q |
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| T |
46773615 |
atgccataatatctcccctacttttactaaaatagtcggccactctttttgaatcaagcttatttactgacttcatct |
46773692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 46768336 - 46768537
Alignment:
| Q |
20 |
gaacgccatacctgaaatttgagaaatttgaaatattccctt--tcagtcactaactagtgtta----tatgttttgttcgtgattagttttcaagcttg |
113 |
Q |
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||||| |||||||||||||||||||||||||||| | | || ||||||||| |||| ||| |||||||||||| ||||| | ||||| | ||| |
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| T |
46768336 |
gaacggcatacctgaaatttgagaaatttgaaatttcctctcagtcagtcacttactatagtttatgttatgttttgttcatgatttgctttcatgattg |
46768435 |
T |
|
| Q |
114 |
gatgttgtatttatattgccacatttgcttagtttcttgctttgtttaagca------ctagtgctgttcattaggttacaaacacattctttttacttc |
207 |
Q |
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|||| ||||||||||||||||||||||||| ||||||| |||||||||||| |||| |||||||||| ||||||| ||||||||||||||||| |
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| T |
46768436 |
gatgctgtatttatattgccacatttgctttatttcttgttttgtttaagcatcagtgctagggctgttcattttgttacaaccacattctttttacttc |
46768535 |
T |
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| Q |
208 |
gt |
209 |
Q |
| |
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|| |
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| T |
46768536 |
gt |
46768537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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