View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_13 (Length: 591)
Name: NF18453_low_13
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 537; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 14 - 573
Target Start/End: Original strand, 43695329 - 43695889
Alignment:
| Q |
14 |
tgaaatgaatccatacatagctataagtctatggtctccaactcccacatcccaattcagaatccaaatctctttcttcgaatcctttcattttcaacaa |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43695329 |
tgaaatgaatccatacatagctataagtctatggtctccaactcccacatcccaattcagaatccaaatctctttcttcgaatcctttcgttttcaacaa |
43695428 |
T |
|
| Q |
114 |
atttctttccatgtcaagatttgccctagcagcaatcagctttgcctttagcctccccgattccagctctaccgcagccacattgtccttcaacttttca |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43695429 |
atttctttccatgtcaagatttgccctagcagcaatcagctttgcctttagcctccccgattccagctctaccgcagccacattgtccttcaacttttca |
43695528 |
T |
|
| Q |
214 |
acttctacggctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagtt-ctccc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43695529 |
acttctacggctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctccc |
43695628 |
T |
|
| Q |
313 |
ataaaacttgaagatccttacaagcctggtcattcatgtctctcacttttctagtcgtaaggaaataaataactctccccaatgcagcgaatgccaaatc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43695629 |
ataaaacttgaagatccttacaagcctggtcattcatgtctctcacttttctagtcttaaggaaataaataactctccccaatgcagcgaatgccaaatc |
43695728 |
T |
|
| Q |
413 |
agtaaacttgcgacttctcttcgatgggcgctcactgagtgaaggattatcagaatatgtttcctccatttgtcctacactacggaaatccgtaagttct |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
43695729 |
agtaaacttgcgacttctcttcgatgggcgctcactgagtgaaggattatcagaatatgtttcctccatttgtcctacactactgaaatccataagttct |
43695828 |
T |
|
| Q |
513 |
tcaattgagggtgagaacaacactgcatcagtaattattgacaaatggttgctgatgctag |
573 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43695829 |
tcaattgagggtgagaacaacactgcatcagtaattattgacaaatggttgctgatgctag |
43695889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 224 - 431
Target Start/End: Original strand, 43709432 - 43709640
Alignment:
| Q |
224 |
ctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttc-tcccataaaacttg |
322 |
Q |
| |
|
|||||||||| || ||||| |||| ||||||| |||||||||| || || |||||||||| ||||||| ||| |||||||||| |||||||||| ||| |
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| T |
43709432 |
ctttctccacgtaacttttcattcttaaagcaaattgaacatgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatttg |
43709531 |
T |
|
| Q |
323 |
aagatccttacaagcctggtcattcatgtctctcacttttctagtcgtaaggaaataaataactctccccaatgcagcgaatgccaaatcagtaaacttg |
422 |
Q |
| |
|
||||||||| ||||| || |||||||||||| || | ||||||||| |||||||||||| |||||| ||||| || | ||| ||| | ||||| ||| || |
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| T |
43709532 |
aagatccttgcaagcttgatcattcatgtctttcgcctttctagtcttaaggaaataaagaactctgcccaaagcggtgaaagcccattcagtgaacctg |
43709631 |
T |
|
| Q |
423 |
cgacttctc |
431 |
Q |
| |
|
||||||||| |
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|
| T |
43709632 |
cgacttctc |
43709640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 224 - 434
Target Start/End: Original strand, 43707708 - 43707920
Alignment:
| Q |
224 |
ctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagtt-ctcccataaaacttg |
322 |
Q |
| |
|
||||||||||| | ||||| |||||||||||| ||| ||||||| | || ||||||| | ||||||| |||| |||||||||| ||| ||||||||| |
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|
| T |
43707708 |
ctttctccacaaaacttttcattcctaaagcacatttaacatggagctctagccaagtgagatcaaatctaaatttctcaagttcctcgtataaaacttt |
43707807 |
T |
|
| Q |
323 |
aagatccttacaagcctggtcattcatgtctctcact-tttctagtcgtaaggaaataaataactctccccaatgcagcgaatgccaaatcagtaaactt |
421 |
Q |
| |
|
| ||||||||||| ||||||||||| ||| ||||| || ||||| | | |||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
43707808 |
agtatccttacaaggttggtcattcatatctttcactcgttttagtcttgggaaaataaataactctccccaatgtggcgaatgccaagtcagtaaactt |
43707907 |
T |
|
| Q |
422 |
gcgacttctcttc |
434 |
Q |
| |
|
|| |||| ||||| |
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|
| T |
43707908 |
gcaacttatcttc |
43707920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 43691274 - 43691332
Alignment:
| Q |
341 |
gtcattcatgtctctcacttttctagtcgtaaggaaataaataactctccccaatgcag |
399 |
Q |
| |
|
||||||||| ||| || ||||||||||| |||||||||||| |||||| ||||| |||| |
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|
| T |
43691274 |
gtcattcatatctttcccttttctagtcttaaggaaataaagaactctgcccaaagcag |
43691332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 394
Target Start/End: Original strand, 43696414 - 43696500
Alignment:
| Q |
308 |
ctcccataaaacttgaagatccttacaagcctggtcattcatgtctctcacttttctagtcgtaaggaaataaataactctccccaa |
394 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||||||| | | |||| || |||||| |||||||||||| |||||| ||||| |
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|
| T |
43696414 |
ctcccagaaaatttgaagatccttacaagctaaatcattcatatatttcaccttcctagtcttaaggaaataaagaactctgcccaa |
43696500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 63 - 400
Target Start/End: Complemental strand, 15827530 - 15827192
Alignment:
| Q |
63 |
tcccaattcagaatccaaatctctttcttcgaatcctttcattttcaacaaatttctttccatgtcaagatttgccctagcagcaatcagctttgccttt |
162 |
Q |
| |
|
||||||||||||||| |||||| ||||| ||| ||||| ||||||||| | |||||||||||||||||| | ||| |||| | ||| ||||| |
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| T |
15827530 |
tcccaattcagaatctaaatctaattctttgaaacctttggatttcaacaagtctctttccatgtcaagattcatctcagctgcaagcgacttaaccttt |
15827431 |
T |
|
| Q |
163 |
agcctccccgattccagctctaccgcagccacattgtccttcaacttttcaacttctacggctttctccacatagcttttaattcctaaagcagattgaa |
262 |
Q |
| |
|
||||| || ||| ||||||| | ||| || ||||||| ||||||| | || | |||||||||| || ||||| |||||||||||| | |||| |
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|
| T |
15827430 |
agcctttccatttcaagctctaaaactaccatgttctccttcatcttttcagcctccagagctttctccatgtatctttttattcctaaagcatagtgaa |
15827331 |
T |
|
| Q |
263 |
catggggatcaagccaagccatatcaaatttaaacttctcaagtt-ctcccataaaacttgaagatccttacaagcctggtcattcatgtctctcacttt |
361 |
Q |
| |
|
|||| | || ||||||| |||||||||||||| ||| | |||| |||||||||||||||||||||||||||||| || ||||||||||||||| |||| |
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|
| T |
15827330 |
catgcgattctagccaagtaatatcaaatttaaatttcgctagttcctcccataaaacttgaagatccttacaagcttgttcattcatgtctctcgcttt |
15827231 |
T |
|
| Q |
362 |
tctagtcgtaaggaaataaataactctccccaatgcagc |
400 |
Q |
| |
|
||||||| |||||||||| | |||| | || |||||||| |
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|
| T |
15827230 |
tctagtcttaaggaaatacagaactttacctaatgcagc |
15827192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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