View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_15 (Length: 555)
Name: NF18453_low_15
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 181 - 536
Target Start/End: Original strand, 37624578 - 37624935
Alignment:
| Q |
181 |
tgtcttgccttttttatctgttgataaaattgttgtcacgacatagattaacattgannnnnnn-cttttaaattacattattaagtttaactttcttta |
279 |
Q |
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| T |
37624578 |
tgtcttgccttttttatttgttgataaaattgttgtcacgacatagattaacattgattttttttcttttaaattacattattaagtttaactttcttta |
37624677 |
T |
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| Q |
280 |
tagatagcacctatcttattttttggtttgaaagcttgtggaaaggccctggaccgcaaaagaaagtaacaatgaaacaatggtacatgcatgttaaaag |
379 |
Q |
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| T |
37624678 |
tagatagcacctatcttattttttggtttgaaagcttgtggaaaggccctggaccgcaaaagaaactgacaatgaaacaatggtacatgcatgttaaaag |
37624777 |
T |
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| Q |
380 |
ttcctttcaagtgcaacgcaatatgggaccaacaactataactatttgagtctatctattggtgtcattggtaaatatatcatgtatgcaattttagcac |
479 |
Q |
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| T |
37624778 |
ttcctttcaagtgcaacgcaatatgggaccaacaactataactatttgagtctatctattggtgtcattggtaaatatatcatgtatgcaattttagcac |
37624877 |
T |
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| Q |
480 |
ctaccacctattagaatatcattggcatcattttattagca-ttttttatgtgactat |
536 |
Q |
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| T |
37624878 |
ctaccacctattagaatatcattggcatcattttattagcatttttttatgtgactat |
37624935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 37624448 - 37624579
Alignment:
| Q |
11 |
catcatcatatgtatttttggtataaagtaaaaactcatcataattagggttttggctcaagactcctatgaaattaatctttccatagagtgtatatga |
110 |
Q |
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| T |
37624448 |
catcatcatatgtatttttggtataaagtaaaaactcatcataattagggttttggctcaagactcctatgaaattaatctttccatagagtgtatatga |
37624547 |
T |
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| Q |
111 |
catagattgattgaagcacaaactcaacaatg |
142 |
Q |
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| T |
37624548 |
catagattgattgaagcacagactcaacaatg |
37624579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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