View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18453_low_19 (Length: 505)

Name: NF18453_low_19
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18453_low_19
NF18453_low_19
[»] chr5 (7 HSPs)
chr5 (18-497)||(1348443-1348922)
chr5 (47-158)||(17391577-17391688)
chr5 (47-148)||(20110845-20110946)
chr5 (47-250)||(19970460-19970663)
chr5 (71-158)||(9617368-9617455)
chr5 (47-158)||(17376423-17376534)
chr5 (67-116)||(17382821-17382870)
[»] chr6 (2 HSPs)
chr6 (47-148)||(16259565-16259666)
chr6 (60-148)||(16229256-16229344)
[»] chr3 (1 HSPs)
chr3 (47-147)||(32243161-32243261)
[»] chr2 (1 HSPs)
chr2 (61-232)||(15783689-15783860)
[»] scaffold0009 (2 HSPs)
scaffold0009 (83-141)||(39751-39809)
scaffold0009 (77-144)||(21471-21538)


Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 1348922 - 1348443
Alignment:
Q  18 aataacggcgttgtcacagttgttgacggtcaatgacttaccagacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaact 117  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1348922 aataacggcgttgtcacaattgttgacggtcaacgacttaccagacgagatactaactcacattatctcttttctcacattcaaagacgctttcagaact 1348823  T
Q  118 accattctttctaagagatggttcccattattccacacacttcccattccccacatcgacgacaaagaagtgaaaaacggaaaggattggattcactttc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1348822 accattctttctaagagatggttcccattattccacacacttccgattccccacatcgacgacaaagaagtgaaaaacggaaaggattggattcactttc 1348723  T
Q  218 gtcaaatgttggatgttgtaatgctctccccacctgcgcaactacaaaccctcaaatcttttcatctaacatgtggttcgtaactctgggggacttattg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1348722 gtcaaatgttggatgttgtaatgctctccccacctgcgcaactacaaaccctcaaatcttttcatctaacatgtggttcgaaactctgggggacttattg 1348623  T
Q  318 tttcggttttaacgactggataaaagcagcaaaacatcgtggtgttgaggatctctatctaaatttgttacacgtccctttggcgctaaccattttccgt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| | ||||||||||| |    
T  1348622 tttcggttttaacgactggataaaagcagcaaaacatcgtggtgttgtggatctctatctaaacttgttacacgtccctttggccccaaccattttccat 1348523  T
Q  418 tgcaaaacacttgtggttctaaaattaaagaatttatgtgtaaacaccatgtttcttcgttcggttcatcttcctatgct 497  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||    
T  1348522 tgcaaaacacttgtggttctaaaattaaagaatttacgtgtaaacaccatgtttcgtagttcggttcatcttcctatgct 1348443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 17391577 - 17391688
Alignment:
Q  47 tcaatgacttaccagacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccatt 146  Q
    |||||||||| || || |||||||||||||||||| ||||||| || |||| |||||||||||| ||||| ||| ||||||| || |||||| || ||||    
T  17391577 tcaatgacttccctgatgagatactaactcacattctctctttgcttccatgcaaagacgcttttagaaccaccgttctttcgaaaagatgggtctcatt 17391676  T
Q  147 attccacacact 158  Q
    || |||| ||||    
T  17391677 atgccactcact 17391688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 20110845 - 20110946
Alignment:
Q  47 tcaatgacttaccagacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccatt 146  Q
    |||| ||||| |||||||| ||||||||||||||  |||||||||| ||||||||||||||||||| ||| ||| |||| || |||| |||| || ||||    
T  20110845 tcaacgacttcccagacgatatactaactcacatcgtctcttttcttccattcaaagacgctttcaaaaccaccgttctctcaaagaaatgggtctcatt 20110944  T
Q  147 at 148  Q
    ||    
T  20110945 at 20110946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 47 - 250
Target Start/End: Complemental strand, 19970663 - 19970460
Alignment:
Q  47 tcaatgacttaccagacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccatt 146  Q
    |||| ||||| |||||||| ||||||||||||||| |||||||||| ||| ||| ||||||||||||||| ||| | ||||| ||||  ||| || ||||    
T  19970663 tcaacgacttcccagacgatatactaactcacattctctcttttcttccaatcagagacgctttcagaaccaccgtgctttccaagacgtgggtctcatt 19970564  T
Q  147 attccacacacttcccattccccacatcgacgacaaagaagtgaaaaacggaaaggattggattcactttcgtcaaatgttggatgttgtaatgctctcc 246  Q
     | | || |||| || |||| |||| ||||| | ||||| ||||| || | ||||||   |||||| || | |||||||||| |||  || ||| |||||    
T  19970563 gtgctactcactcccgattctccacttcgacaataaagacgtgaacaatgtaaaggaacagattcagttccatcaaatgttgaatgccgttatgttctcc 19970464  T
Q  247 ccac 250  Q
    ||||    
T  19970463 ccac 19970460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 9617368 - 9617455
Alignment:
Q  71 taactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccattattccacacact 158  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||| | |||| || || || ||| ||||||||| |||| ||||    
T  9617368 taactcacattctctcttttctcccactcaaatacgctttcagaactatcgttctctcgaaaaggtgggtcccattatcccactcact 9617455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 17376423 - 17376534
Alignment:
Q  47 tcaatgacttaccagacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccatt 146  Q
    |||| ||||| || ||||||||||||||||| ||| ||||||| || ||||  ||||||||||| |||  |||  ||||||| || |||||| || ||||    
T  17376423 tcaacgacttccccgacgagatactaactcatattctctctttacttccatgtaaagacgcttttagatttacagttctttcgaaaagatggatctcatt 17376522  T
Q  147 attccacacact 158  Q
    || |||| ||||    
T  17376523 atgccactcact 17376534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 17382821 - 17382870
Alignment:
Q  67 atactaactcacattatctcttttctcccattcaaagacgctttcagaac 116  Q
    ||||||||||||||| |||||||||| |||| |||| ||||||| |||||    
T  17382821 atactaactcacattctctcttttcttccatgcaaacacgcttttagaac 17382870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 16259666 - 16259565
Alignment:
Q  47 tcaatgacttaccagacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccatt 146  Q
    |||| ||||| | |||||| |||||||  || ||| |||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||| || ||||    
T  16259666 tcaacgacttccaagacgacatactaagccaaattctctcttttcttccaatcaaagacgctttcagaactaccattctttcgaagaggtgggtctcatt 16259567  T
Q  147 at 148  Q
    ||    
T  16259566 at 16259565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 16229344 - 16229256
Alignment:
Q  60 agacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccattat 148  Q
    |||||| ||| ||| ||| ||| |||||||||| ||| ||||||| ||||||||||||||||||||||| ||||| ||| || ||||||    
T  16229344 agacgacatagtaagtcaaattctctcttttcttccaatcaaagaggctttcagaactaccattctttcgaagaggtgggtctcattat 16229256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 32243261 - 32243161
Alignment:
Q  47 tcaatgacttaccagacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccatt 146  Q
    ||||||| || | |||||| | ||||| || |||| ||| |||||| ||| ||||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  32243261 tcaatgaattccaagacgacaaactaagtctcattctcttttttcttccagtcaaagacgctttcagaactaccattctttcgaagaggtgggtcccatt 32243162  T
Q  147 a 147  Q
    |    
T  32243161 a 32243161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 232
Target Start/End: Original strand, 15783689 - 15783860
Alignment:
Q  61 gacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccattattccacacacttc 160  Q
    ||||| ||||||||||| || ||||||||||| ||  ||||||| |||||||| || ||| ||||||| ||||||||| | | ||| | || | |||| |    
T  15783689 gacgatatactaactcatataatctcttttctaccgatcaaagatgctttcaggacaacccttctttcaaagagatgggttctattgtgccgctcactcc 15783788  T
Q  161 ccattccccacatcgacgacaaagaagtgaaaaacggaaaggattggattcactttcgtcaaatgttggatg 232  Q
    || ||| ||||||| ||||  | |  |||||||| | |||||| | |||||| || ||||||||||||||||    
T  15783789 ccgttctccacatcaacgatgatggcgtgaaaaatgaaaaggacttgattcagttccgtcaaatgttggatg 15783860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 39751 - 39809
Alignment:
Q  83 tctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttc 141  Q
    |||||||||| ||  ||||| ||||||||||||||||||||||||| ||||| ||||||    
T  39751 tctcttttcttccgatcaaatacgctttcagaactaccattctttccaagaggtggttc 39809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 21471 - 21538
Alignment:
Q  77 acattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttccca 144  Q
    ||||| |||||||||| ||  ||||| | ||||||||||||||| ||||||| ||| |||||||||||    
T  21471 acattctctcttttcttccgatcaaatatgctttcagaactaccgttctttccaagcgatggttccca 21538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University