View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18453_low_2 (Length: 1018)
Name: NF18453_low_2
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_2 |
 | |
|
| [»] scaffold0479 (2 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 790; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 15 - 874
Target Start/End: Original strand, 33811001 - 33811867
Alignment:
| Q |
15 |
atcaagaaagttatgttttctattgtgatagtcaaagtgcaattcaccttagcaagaatttgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811001 |
atcaagaaatttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
33811100 |
T |
|
| Q |
115 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811101 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
33811200 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811201 |
gagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggttt |
33811300 |
T |
|
| Q |
315 |
ccagccacaa---------taatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctacca |
405 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811301 |
ccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctacca |
33811400 |
T |
|
| Q |
406 |
tgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggtt |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811401 |
tgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggtt |
33811500 |
T |
|
| Q |
506 |
caaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcctcata |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811501 |
caaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcata |
33811600 |
T |
|
| Q |
606 |
agagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattccc |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811601 |
agagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattccc |
33811700 |
T |
|
| Q |
706 |
attattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcat |
805 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33811701 |
attattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcat |
33811798 |
T |
|
| Q |
806 |
tttacgtttccgctaaaatgcctattttgagttcacggaggagggaaattaagcaggaatttcccaaca |
874 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
33811799 |
tttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33811867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 15 - 874
Target Start/End: Original strand, 33815919 - 33816785
Alignment:
| Q |
15 |
atcaagaaagttatgttttctattgtgatagtcaaagtgcaattcaccttagcaagaatttgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815919 |
atcaagaaatttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
33816018 |
T |
|
| Q |
115 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816019 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
33816118 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816119 |
gagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggttt |
33816218 |
T |
|
| Q |
315 |
ccagccacaa---------taatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctacca |
405 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816219 |
ccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctacca |
33816318 |
T |
|
| Q |
406 |
tgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggtt |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816319 |
tgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggtt |
33816418 |
T |
|
| Q |
506 |
caaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcctcata |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816419 |
caaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcata |
33816518 |
T |
|
| Q |
606 |
agagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattccc |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816519 |
agagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattccc |
33816618 |
T |
|
| Q |
706 |
attattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcat |
805 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33816619 |
attattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcat |
33816716 |
T |
|
| Q |
806 |
tttacgtttccgctaaaatgcctattttgagttcacggaggagggaaattaagcaggaatttcccaaca |
874 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
33816717 |
tttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33816785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 321 - 874
Target Start/End: Original strand, 33807662 - 33808213
Alignment:
| Q |
321 |
acaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctaccatgtcagtaacaaatt |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807662 |
acaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctaccatgtcagtaacaaatt |
33807761 |
T |
|
| Q |
421 |
gacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggttcaaaaccctctataa |
520 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807762 |
gacaaacttggcaatgggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggttcaaaaccctctataa |
33807861 |
T |
|
| Q |
521 |
atagagaagagtttcagcaatgaaacacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaa |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807862 |
atagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaa |
33807961 |
T |
|
| Q |
621 |
aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtg |
720 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807962 |
aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtg |
33808061 |
T |
|
| Q |
721 |
gagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgcta |
820 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33808062 |
gagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcattttacgtttccgcta |
33808159 |
T |
|
| Q |
821 |
aaatgcctattttgagttcacggaggagggaaattaagcaggaatttcccaaca |
874 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
33808160 |
aagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33808213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 963 - 1002
Target Start/End: Complemental strand, 4909344 - 4909305
Alignment:
| Q |
963 |
aaactacttaggtatgagcaaaatttacagtctatttttc |
1002 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4909344 |
aaactacttaggtatgagcaaaatttacagtctatttttc |
4909305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 696 - 791
Target Start/End: Original strand, 16698504 - 16698601
Alignment:
| Q |
696 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
791 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||||| | ||||||| | ||||||| || ||||||||||||||| ||||||| |||||||| |
|
|
| T |
16698504 |
ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaatt |
16698601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 696 - 791
Target Start/End: Complemental strand, 22764002 - 22763905
Alignment:
| Q |
696 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
791 |
Q |
| |
|
||||||||||||||| ||||||| | | |||||||||| | ||||||||||||||||| || |||| ||||||||||||||||| ||||||||| |
|
|
| T |
22764002 |
ttgtattcccattatcattatagcataagttttaagaggcccaatggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt |
22763905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 905 - 937
Target Start/End: Complemental strand, 4909402 - 4909370
Alignment:
| Q |
905 |
ttggtactatcttcaactcttggaaaccatgtg |
937 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4909402 |
ttggtactatcttcaactcttggaaaccatgtg |
4909370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 480 - 855
Target Start/End: Original strand, 50603003 - 50603384
Alignment:
| Q |
480 |
gaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatg-aaacacaccacaacata-----atcctcactcacat |
573 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
50603003 |
gaaccaagcatttaatgcttacggttcatttctctctataaatagagaagagcttcagcaaagcaaacacaccacaacatagcacaatcctcactcacac |
50603102 |
T |
|
| Q |
574 |
agagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgt--gagagttgtatctacaaattgagatacatag |
671 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
50603103 |
agagttgagagaaaaatagaaagttcctcataagagtg--agagaaaaatatagtgagccaatttgtatgagagttgtatctacaaattgagatatatag |
50603200 |
T |
|
| Q |
672 |
ttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgaga |
771 |
Q |
| |
|
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
50603201 |
ttaggtccatctaaaggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggttccgtggttttttcttactcacattgaga |
50603300 |
T |
|
| Q |
772 |
aggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaaatgcctattttgagttcacggaggagggaaatt |
855 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
50603301 |
aggttttccacgctaaaattttattgtgtgtcattttacgttttcgctaaagtgtctattttgagttcacggaggagagaaatt |
50603384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 54968127 - 54967873
Alignment:
| Q |
16 |
tcaagaaagttatgttttctattgtgatagtcaaagtgcaattcaccttagcaagaatttgacataccattcaaggtcaaaacacatcgatgtgaggtat |
115 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||| || |||||||| || |||||||| | |||||||| || || ||||||||||| |||||||||||| |
|
|
| T |
54968127 |
tcaagaaagttatgttctctattgcgacagtcagagcgcaattcatctcagcaagaactcaacataccactccagatcaaaacacattgatgtgaggtat |
54968028 |
T |
|
| Q |
116 |
cattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaag |
215 |
Q |
| |
|
|| |||||||||||||||||||| | |||| || || || |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54968027 |
cactggattcgtgatgtgttggaaagtaaattgttgaaagtagagaaagttcacaccaatgagaacggagcagatatgatgacaaaagctctaccaaaag |
54967928 |
T |
|
| Q |
216 |
agaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatc |
270 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
54967927 |
agaagatagagttttgcaaacaagctgctggattggcagcaaccccaaattaatc |
54967873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 624 - 874
Target Start/End: Complemental strand, 54967477 - 54967210
Alignment:
| Q |
624 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
717 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
54967477 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
54967378 |
T |
|
| Q |
718 |
gtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- |
803 |
Q |
| |
|
||||| ||| ||||||| | |||||||||||||||||| || |||| ||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
54967377 |
gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctttt |
54967279 |
T |
|
| Q |
804 |
attttacgtttccgctaaaatgcctattttgagttcacggaggagggaaattaagcaggaatttcccaaca |
874 |
Q |
| |
|
|||| ||||||||||| | ||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
54967278 |
atttcacgtttccgct--agtgcctattttgagttgacggaggagggaaattatgcaggcatttcccaaca |
54967210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 677 - 874
Target Start/End: Complemental strand, 44782733 - 44782524
Alignment:
| Q |
677 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa |
772 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||| | |||||||||||||||| |||| |||| |||||||| |
|
|
| T |
44782733 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa |
44782634 |
T |
|
| Q |
773 |
ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaaatgcctattttgagttcacggaggagggaaattaagcag |
861 |
Q |
| |
|
||||||||||||||||||| | || |||||| |||| ||||||||||| | || |||||||||||||||||||||||||||||| |||| |
|
|
| T |
44782633 |
ggttttccacgctaaaattctctt-tgtgtcattacgtttatatttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcag |
44782537 |
T |
|
| Q |
862 |
gaatttcccaaca |
874 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
44782536 |
gcatttcccaaca |
44782524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 624 - 791
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
| Q |
624 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
717 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| | ||| ||||| ||||||| ||||||||| | |||||||||| |||| |||||| |
|
|
| T |
39298736 |
atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata |
39298834 |
T |
|
| Q |
718 |
gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt |
791 |
Q |
| |
|
||||| |||||||||| | |||||||||| ||||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
39298835 |
gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt |
39298908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 677 - 793
Target Start/End: Complemental strand, 18556511 - 18556392
Alignment:
| Q |
677 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaag |
773 |
Q |
| |
|
||||||| ||||||||| | |||||||| |||| | ||||||||||| ||||||||||| |||||||||||||||| |||| |||| ||||||||| |
|
|
| T |
18556511 |
tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag |
18556412 |
T |
|
| Q |
774 |
gttttccacgctaaaatttt |
793 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18556411 |
gttttccacgctaaaatttt |
18556392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 618 - 722
Target Start/End: Complemental strand, 31725448 - 31725346
Alignment:
| Q |
618 |
aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattata |
717 |
Q |
| |
|
||||||||||| | |||||||||||| |||| |||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| ||||| |
|
|
| T |
31725448 |
aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata |
31725351 |
T |
|
| Q |
718 |
gtgga |
722 |
Q |
| |
|
|||| |
|
|
| T |
31725350 |
ttgga |
31725346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 677 - 791
Target Start/End: Complemental strand, 54980051 - 54979933
Alignment:
| Q |
677 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaa |
772 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| ||| ||||||| | |||||||||||||||||| || |||| |||||||| |
|
|
| T |
54980051 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa |
54979952 |
T |
|
| Q |
773 |
ggttttccacgctaaaatt |
791 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
54979951 |
ggttttccatgctaaaatt |
54979933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 963 - 1002
Target Start/End: Complemental strand, 4486302 - 4486263
Alignment:
| Q |
963 |
aaactacttaggtatgagcaaaatttacagtctatttttc |
1002 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4486302 |
aaactacttaggtatgagcaaaatttacagtctatttttc |
4486263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 696 - 795
Target Start/End: Original strand, 17645800 - 17645897
Alignment:
| Q |
696 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt |
795 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||| ||| | | |||||||||||||| || | | ||||||||||||||||||||||||||||||| |
|
|
| T |
17645800 |
ttgtattgtcattatcattatagtggaagtttaagacgctcaagagtcccgtggttttttttt--ttatattgagaaggttttccacgctaaaattttgt |
17645897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 905 - 937
Target Start/End: Complemental strand, 4486360 - 4486328
Alignment:
| Q |
905 |
ttggtactatcttcaactcttggaaaccatgtg |
937 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4486360 |
ttggtactatcttcaactcttggaaaccatgtg |
4486328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 502 - 874
Target Start/End: Complemental strand, 31152298 - 31151926
Alignment:
| Q |
502 |
ggttcaaaaccctctataaatagagaagagtttcagcaatgaaa-cacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcc |
600 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |||||||| | || |||||||||||| || | || || |||||||||||||||||||||||||| |
|
|
| T |
31152298 |
ggttcaaatctctctataaatagagaagagcttcagcaaagcaatcacaccacaacacaa--cacaatcctcgggagttgagagaaaaatagagagttcc |
31152201 |
T |
|
| Q |
601 |
tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta |
700 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
31152200 |
tcgtaagagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagttaggtccatctgagggtgaagatttgta |
31152101 |
T |
|
| Q |
701 |
ttcccattattattatagtggagatttaagaggcttacgggtcccgtggt-ttttccttactcacattgagaaggttttccacgctaaaattttgttgtg |
799 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31152100 |
ttcccattattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccacattaaaattttgttgtg |
31152001 |
T |
|
| Q |
800 |
tgtcattttacgtttccgctaaaatgcctattttgagttcacggaggagggaaattaagcaggaatttcccaaca |
874 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
31152000 |
tgtcattttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaaca |
31151926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 22982057 - 22981815
Alignment:
| Q |
15 |
atcaagaaagttatgttttctattgtgatagtcaaagtgcaattcaccttagcaagaatttgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||| |||| |||||| ||||||| || ||||| ||||| ||||| || |||||||| | ||||||||| || || || |||||||| || |||||||| |
|
|
| T |
22982057 |
atcaaaaaagctatgttctctattgcgacagtcagagtgcgattcatctcagcaagaactcgacataccactctagatcgaaacacattgacgtgaggta |
22981958 |
T |
|
| Q |
115 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
214 |
Q |
| |
|
|| || ||| |||||||||||||| |||| || || || |||||||| ||||||||||||| || |||||||| |||||||||||| ||||||||||| |
|
|
| T |
22981957 |
ccactgtattaatgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgacaaaacctctaccaaaa |
22981858 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaacaagctgcaggcttggcagcaa |
257 |
Q |
| |
|
|| ||||| |||||||| ||||||||||| || |||| ||||| |
|
|
| T |
22981857 |
gaaaagattgagttttgcaaacaagctgctggattggaagcaa |
22981815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 23806351 - 23806593
Alignment:
| Q |
15 |
atcaagaaagttatgttttctattgtgatagtcaaagtgcaattcaccttagcaagaatttgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||| |||| |||||| ||||||| || ||||| ||||| ||||| || |||||||| | ||||||||| || || || |||||||| || |||||||| |
|
|
| T |
23806351 |
atcaaaaaagctatgttctctattgcgacagtcagagtgcgattcatctcagcaagaactcgacataccactctagatcgaaacacattgacgtgaggta |
23806450 |
T |
|
| Q |
115 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
214 |
Q |
| |
|
|| || ||| |||||||||||||| |||| || || || |||||||| ||||||||||||| || |||||||| |||||||||||| ||||||||||| |
|
|
| T |
23806451 |
ccactgtattaatgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgacaaaacctctaccaaaa |
23806550 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaacaagctgcaggcttggcagcaa |
257 |
Q |
| |
|
|| ||||| |||||||| ||||||||||| || |||| ||||| |
|
|
| T |
23806551 |
gaaaagattgagttttgcaaacaagctgctggattggaagcaa |
23806593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 615 - 798
Target Start/End: Complemental strand, 1111564 - 1111378
Alignment:
| Q |
615 |
gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattatta |
712 |
Q |
| |
|
|||||||||||| || ||||||||||||| | |||||| ||||||||||||||||||||||| || | |||||||| ||||||||| |||||||| |
|
|
| T |
1111564 |
gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta |
1111465 |
T |
|
| Q |
713 |
ttatagtgg-agatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgt |
798 |
Q |
| |
|
|||| | | ||||||||||| |||| | ||||| || |||||||||| | ||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
1111464 |
ttattatagtagatttaagagacttatgagtcccatgatttttccttatttacattcagaaggttttctacactaaaattttgttgt |
1111378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 677 - 791
Target Start/End: Original strand, 22981504 - 22981621
Alignment:
| Q |
677 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag |
773 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | |||||||||||||||||| || |||||||||||||| |
|
|
| T |
22981504 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag |
22981603 |
T |
|
| Q |
774 |
gttttccacgctaaaatt |
791 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22981604 |
gttttccacgctaaaatt |
22981621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 677 - 791
Target Start/End: Complemental strand, 23806904 - 23806787
Alignment:
| Q |
677 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag |
773 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | |||||||||||||||||| || |||||||||||||| |
|
|
| T |
23806904 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag |
23806805 |
T |
|
| Q |
774 |
gttttccacgctaaaatt |
791 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23806804 |
gttttccacgctaaaatt |
23806787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 1105101 - 1104988
Alignment:
| Q |
198 |
caaaagctctaccaaaagagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatctaaggatagtttccctttggctggagg |
297 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||| |||| | |||||||||| |||||| |||||| ||||||||| ||||||| | ||| ||| |||| |
|
|
| T |
1105101 |
caaaagctctaccaaaaaagaagttagatttttataaagcaattgcaggcttgacagcaatcccaaattaatctaagtatagttttcgtttagctagagg |
1105002 |
T |
|
| Q |
298 |
gggagaattgttgg |
311 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
1105001 |
gagataattgttgg |
1104988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 1105207 - 1105112
Alignment:
| Q |
71 |
aatttgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaatt |
166 |
Q |
| |
|
||||| |||||||||| ||| |||||||||||| |||| || ||||||| || | ||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
1105207 |
aatttcacataccatttaagatcaaaacacatcaatgtaagaaatcattgaatacatgacgtgttagagaataaactgctttaaatagagaaaatt |
1105112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 809 - 874
Target Start/End: Original strand, 22981647 - 22981710
Alignment:
| Q |
809 |
acgtttccgctaaaatgcctattttgagttcacggaggagggaaattaagcaggaatttcccaaca |
874 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
22981647 |
acgtttccgctag--tgcctgttttgagttcacggaggggggaaattatgcagtcatttcccaaca |
22981710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 824 - 874
Target Start/End: Complemental strand, 23806748 - 23806698
Alignment:
| Q |
824 |
tgcctattttgagttcacggaggagggaaattaagcaggaatttcccaaca |
874 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
23806748 |
tgcctgttttgagttcacggaggggggaaattatgcagtcatttcccaaca |
23806698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 4836462 - 4836172
Alignment:
| Q |
15 |
atcaagaaagttatgttttctattgtgatagtcaaagtgcaattcaccttagcaagaatttgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836462 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
4836363 |
T |
|
| Q |
115 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
214 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||| | ||||| ||| |
|
|
| T |
4836362 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacacaaatgagaatggagcagacatgatgacaaaaccgctaccgaaa |
4836263 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgt |
308 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||| ||||||||||||||||| ||||| || |||| ||||||||||||||||||||| |
|
|
| T |
4836262 |
gagaagatagagttttgcaaacaagctgctggaatggtagcaaccccaaactaat-taagg--cattcccctatggctggagggggagaattgt |
4836172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 92 - 270
Target Start/End: Complemental strand, 24380105 - 24379927
Alignment:
| Q |
92 |
tcaaaacacatcgatgtgaggtatcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagata |
191 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||| |||| || || || |||||||| ||||||||||| | || ||||| || | |
|
|
| T |
24380105 |
tcaaaacacaatgatgtgaggtatcactggattcgtgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaataagaatggagccgaca |
24380006 |
T |
|
| Q |
192 |
tgatgacaaaagctctaccaaaagagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatc |
270 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
24380005 |
tgatgacaaaacctctatcaaaagagaagatagagttttgcaaacaagctgctggattggcagcaaccccaaactaatc |
24379927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 677 - 874
Target Start/End: Complemental strand, 4842857 - 4842648
Alignment:
| Q |
677 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa |
772 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||| ||||||||||| | |||||||||| | |||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
4842857 |
tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa |
4842758 |
T |
|
| Q |
773 |
ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaaatgcctattttgagttcacggaggagggaaattaagcag |
861 |
Q |
| |
|
||||||||||||||||||| | || |||||| |||| ||||||||||| | ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4842757 |
ggttttccacgctaaaattctctt-tgtgtcattacacttatatttcacgtttccgct--agtgcctattttgagttcacggaggagggaaattatgcag |
4842661 |
T |
|
| Q |
862 |
gaatttcccaaca |
874 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
4842660 |
gcatttcccaaca |
4842648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 624 - 874
Target Start/End: Complemental strand, 25857395 - 25857131
Alignment:
| Q |
624 |
atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgagggtgaagat-ttgtattcccattattattata |
717 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||| || ||| || ||||||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
25857395 |
atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata |
25857296 |
T |
|
| Q |
718 |
gtgga-gatttaagaggcttacgggtcccgtggtttttcctta-ctcacattgagaaggttttccacgctaaaattttgttgtgtgtc-----------a |
804 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| | |
|
|
| T |
25857295 |
gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaatt---ctctgtgtcattacgcttata |
25857199 |
T |
|
| Q |
805 |
ttttacgtttccgctaaaatgcctattttgagttcacggaggagggaaattaagcaggaatttcccaaca |
874 |
Q |
| |
|
||| ||||||||||| | |||||||||| |||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
25857198 |
tttcacgtttccgct--agtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaaca |
25857131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 624 - 875
Target Start/End: Complemental strand, 4835840 - 4835574
Alignment:
| Q |
624 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
717 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||| ||||||||||| |||||| |
|
|
| T |
4835840 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata |
4835741 |
T |
|
| Q |
718 |
gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgt-tgt------gtgt-catt |
806 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| | | ||| || | ||| |
|
|
| T |
4835740 |
gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctgtgtcattacgtttatatt |
4835641 |
T |
|
| Q |
807 |
ttacgtttccgctaaaatgcctattttgagttcacggaggagggaaattaagcaggaatttcccaacac |
875 |
Q |
| |
|
| |||||||| || | ||||||||||||||||| ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
4835640 |
tcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaacac |
4835574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 677 - 793
Target Start/End: Complemental strand, 13465165 - 13465046
Alignment:
| Q |
677 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag |
773 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | |||||| ||||||||||| || |||||||||||||| |
|
|
| T |
13465165 |
tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag |
13465066 |
T |
|
| Q |
774 |
gttttccacgctaaaatttt |
793 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13465065 |
gttttccacgctaaaatttt |
13465046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 614 - 783
Target Start/End: Complemental strand, 8252853 - 8252686
Alignment:
| Q |
614 |
agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagataca----tagttaggtccacctgagggtgaagatttgtattcccatta |
709 |
Q |
| |
|
|||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| || ||| ||||| || | | ||||| ||||||||||| ||| |
|
|
| T |
8252853 |
agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgtta |
8252754 |
T |
|
| Q |
710 |
ttattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacg |
783 |
Q |
| |
|
|||||| | || || ||||||| |||||| |||||| | |||||||||| |||||||||||||||||| |
|
|
| T |
8252753 |
ttattacattgaggagttaagagacttacgagtcccg------taccttactcacgttgagaaggttttccacg |
8252686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 696 - 791
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
| Q |
696 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt |
791 |
Q |
| |
|
||||||| ||||||| ||| |||| || ||||||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
27341120 |
ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt |
27341025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 679 - 800
Target Start/End: Original strand, 17845847 - 17845969
Alignment:
| Q |
679 |
cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttt |
777 |
Q |
| |
|
||||| ||||||||| | ||||||| ||||||| ||||||||||| ||||||||| | ||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
17845847 |
cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt |
17845946 |
T |
|
| Q |
778 |
tccacgctaaaattttgttgtgt |
800 |
Q |
| |
|
||||| |||||||| | |||||| |
|
|
| T |
17845947 |
tccactctaaaattctcttgtgt |
17845969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 677 - 791
Target Start/End: Complemental strand, 24379487 - 24379370
Alignment:
| Q |
677 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag |
773 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||| ||||||||||| | |||||||||| | | ||||||||||||||| || |||||||||||||| |
|
|
| T |
24379487 |
tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag |
24379388 |
T |
|
| Q |
774 |
gttttccacgctaaaatt |
791 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
24379387 |
gttttccacgttaaaatt |
24379370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 821 - 874
Target Start/End: Original strand, 24380110 - 24380163
Alignment:
| Q |
821 |
aaatgcctattttgagttcacggaggagggaaattaagcaggaatttcccaaca |
874 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
24380110 |
aaatgcctattttgagttcacagaggagggaaattatgcaggcatttcccaaca |
24380163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 725 - 791
Target Start/End: Complemental strand, 38994218 - 38994151
Alignment:
| Q |
725 |
tttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
791 |
Q |
| |
|
||||||||||| |||||||||||||||||| || ||| |||||||||||||||||||| ||||||| |
|
|
| T |
38994218 |
tttaagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaatt |
38994151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 124; Significance: 3e-63; HSPs: 2)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 2019 - 2274
Alignment:
| Q |
15 |
atcaagaaagttatgttttctattgtgatagtcaaagtgcaattcaccttagcaagaatttgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
|||||||||| |||||| ||||||| || |||||||| || ||||| || |||||||| | ||||| || || || |||||||| || ||||||||||| |
|
|
| T |
2019 |
atcaagaaagctatgttctctattgcgacagtcaaagcgcgattcatctcagcaagaactcaacatatcactccagatcaaaacatattgatgtgaggta |
2118 |
T |
|
| Q |
115 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
214 |
Q |
| |
|
||| |||||||||||||||||||||| |||| || || || |||||||| ||||||||||||| || |||||||| |||||||| ||| ||||||||||| |
|
|
| T |
2119 |
tcactggattcgtgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgaccaaacctctaccaaaa |
2218 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatc |
270 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
2219 |
gagaagattgagttttgcaaacaagctgctggattggcagcaaccccaaactaatc |
2274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 677 - 874
Target Start/End: Original strand, 2727 - 2936
Alignment:
| Q |
677 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa |
772 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | |||||||||||||||| |||| ||||||||||||| |
|
|
| T |
2727 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa |
2826 |
T |
|
| Q |
773 |
ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaaatgcctattttgagttcacggaggagggaaattaagcag |
861 |
Q |
| |
|
||||||||||||||||||| | || |||||| |||| ||||||||||| | || ||||||||||||||||||| |||||||||| ||| |
|
|
| T |
2827 |
ggttttccacgctaaaattctctt-tgtgtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcat |
2923 |
T |
|
| Q |
862 |
gaatttcccaaca |
874 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
2924 |
gcatttcccaaca |
2936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 659 - 874
Target Start/End: Complemental strand, 29707069 - 29706854
Alignment:
| Q |
659 |
ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcctt |
758 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||||| || | |||||||| || |||||| |
|
|
| T |
29707069 |
ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt |
29706970 |
T |
|
| Q |
759 |
actcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaaatgcctattttgagttcacggaggagggaaattaag |
858 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||||||||||||||||| ||| |||||| ||| |||||| |||||||||| ||| ||||||| | |
|
|
| T |
29706969 |
actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatg |
29706870 |
T |
|
| Q |
859 |
caggaatttcccaaca |
874 |
Q |
| |
|
||| |||| |||||| |
|
|
| T |
29706869 |
gaggcattttccaaca |
29706854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 699 - 791
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
| Q |
699 |
tattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt |
791 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | || |||||| ||||| |||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
27642132 |
tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt |
27642225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 80; Significance: 5e-37; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 624 - 856
Target Start/End: Complemental strand, 26752 - 26516
Alignment:
| Q |
624 |
atagtgagccaatttgtgagagttgtatctacaaattgagataca-----tagttaggtccacctgagggtgaag-atttgtattcccattattattata |
717 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | | |||| || ||||||| |||||| || | |||||||| | |||| |||| | |
|
|
| T |
26752 |
atagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagttgtattctcgttatcattaga |
26653 |
T |
|
| Q |
718 |
gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccg |
817 |
Q |
| |
|
||||| |||||||||| | ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||| |||| ||||||||||| || |
|
|
| T |
26652 |
gtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgtt--gtgttattttacgttttcg |
26555 |
T |
|
| Q |
818 |
ctaaaatgcctattttgagttcacggaggagggaaatta |
856 |
Q |
| |
|
||||| || |||||||||||||||| |||||||| |||| |
|
|
| T |
26554 |
ctaaagtgtctattttgagttcacgaaggagggagatta |
26516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 3e-29; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 624 - 874
Target Start/End: Original strand, 41481548 - 41481815
Alignment:
| Q |
624 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
717 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
41481548 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
41481647 |
T |
|
| Q |
718 |
gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- |
803 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||| |||| |||| ||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
41481648 |
gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat |
41481746 |
T |
|
| Q |
804 |
attttacgtttccgctaaaatgcctattttgagttcacggaggagggaaattaagcaggaatttcccaaca |
874 |
Q |
| |
|
|||| ||||||||||| | || |||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
41481747 |
atttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
41481815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 624 - 874
Target Start/End: Original strand, 36167547 - 36167813
Alignment:
| Q |
624 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
717 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
36167547 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
36167646 |
T |
|
| Q |
718 |
gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- |
803 |
Q |
| |
|
||||| | |||||||||| | |||||| ||||||||| |||| |||| ||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
36167647 |
gtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat |
36167744 |
T |
|
| Q |
804 |
attttacgtttccgctaaaatgcctattttgagttcacggaggagggaaattaagcaggaatttcccaaca |
874 |
Q |
| |
|
|||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
36167745 |
atttcacgtttccgct--agtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
36167813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 680 - 791
Target Start/End: Complemental strand, 18951326 - 18951211
Alignment:
| Q |
680 |
acctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggt |
775 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||| || | |||| |||||||||| |||| |||||||||||||||| |
|
|
| T |
18951326 |
acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt |
18951227 |
T |
|
| Q |
776 |
tttccacgctaaaatt |
791 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
18951226 |
tttccatgctaaaatt |
18951211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 963 - 1002
Target Start/End: Original strand, 26492554 - 26492593
Alignment:
| Q |
963 |
aaactacttaggtatgagcaaaatttacagtctatttttc |
1002 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26492554 |
aaactacttaggtatgagcaaaatttagagtctatttttc |
26492593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 824 - 869
Target Start/End: Complemental strand, 18951174 - 18951129
Alignment:
| Q |
824 |
tgcctattttgagttcacggaggagggaaattaagcaggaatttcc |
869 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
18951174 |
tgcctattttgagttcacggaggaggcaaattatgcaggcatttcc |
18951129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 905 - 937
Target Start/End: Original strand, 26492496 - 26492528
Alignment:
| Q |
905 |
ttggtactatcttcaactcttggaaaccatgtg |
937 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
26492496 |
ttggtactatcttcaactcttggaaaccatgtg |
26492528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 311
Target Start/End: Original strand, 12935055 - 12935084
Alignment:
| Q |
282 |
tccctttggctggagggggagaattgttgg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12935055 |
tccctttggctggagggggagaattgttgg |
12935084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 1e-25; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 624 - 874
Target Start/End: Complemental strand, 9757480 - 9757212
Alignment:
| Q |
624 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
717 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
9757480 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
9757381 |
T |
|
| Q |
718 |
gtgga---gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc---------- |
803 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
9757380 |
gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctta |
9757282 |
T |
|
| Q |
804 |
-attttacgtttccgctaaaatgcctattttgagttcacggaggagggaaattaagcaggaatttcccaaca |
874 |
Q |
| |
|
|||| ||||||||||| | |||||||||||||||||||||||| |||||||| ||||| |||| |||||| |
|
|
| T |
9757281 |
tatttcacgtttccgct--agtgcctattttgagttcacggaggaaggaaattatgcaggcatttaccaaca |
9757212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 696 - 793
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
| Q |
696 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatttt |
793 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
37287069 |
ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt |
37286972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 15 - 311
Target Start/End: Complemental strand, 25003727 - 25003452
Alignment:
| Q |
15 |
atcaagaaagttatgttttctattgtgatagtcaaagtgcaattcaccttagcaagaatttgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||| || || || | |||||| || |||||||| |||||||| ||||||||||| |
|
|
| T |
25003727 |
atcaacaaagttatgttccctattgtgatagtcaaagtgcaattcacctcagaaataactcgacata-caatcaaggtc-aaacacatagatgtgaggta |
25003630 |
T |
|
| Q |
115 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
214 |
Q |
| |
|
|| |||||||||| ||||| | ||| ||||||| |||||||| ||||| ||||||| || || |||||||||||||| |||||||||| |
|
|
| T |
25003629 |
--at-------gtgatgtgttagagaa-agactactgcaaaaagagaaaa---acaccgatgacaaagggacaaatatgatgacaaaaactctaccaaat |
25003543 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttgg |
311 |
Q |
| |
|
|| | || |||||||| || || | ||| |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
25003542 |
ga------aaaggtttgtaaagaatatgaaagctatacagcaaccccaaactaatttgaagatattttccctttggctggagggagagaattgttgg |
25003452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 679 - 791
Target Start/End: Complemental strand, 42683038 - 42682924
Alignment:
| Q |
679 |
cacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtt |
776 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||| | |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
42683038 |
cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt |
42682939 |
T |
|
| Q |
777 |
ttccacgctaaaatt |
791 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
42682938 |
ttccacgctgaaatt |
42682924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 14178325 - 14178355
Alignment:
| Q |
282 |
tccctttggctggagggggagaattgttggt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14178325 |
tccctttggctggagggggagaattgttggt |
14178355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 311
Target Start/End: Complemental strand, 28607548 - 28607519
Alignment:
| Q |
282 |
tccctttggctggagggggagaattgttgg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28607548 |
tccctttggctggagggggagaattgttgg |
28607519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 696 - 789
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
| Q |
696 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaa |
789 |
Q |
| |
|
|||||||| |||||| |||||||| | |||||||||| | |||||||||||||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
37037942 |
ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa |
37038035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 696 - 791
Target Start/End: Complemental strand, 342404 - 342306
Alignment:
| Q |
696 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttt-ttcc-ttactcacattgagaaggttttccacgctaaaatt |
791 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||| | || ||||||||||| |||| || |||| |||||||||||||| |||||||||||| |
|
|
| T |
342404 |
ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaatt |
342306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 824 - 874
Target Start/End: Complemental strand, 342267 - 342217
Alignment:
| Q |
824 |
tgcctattttgagttcacggaggagggaaattaagcaggaatttcccaaca |
874 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||| |||| |||||| |
|
|
| T |
342267 |
tgcctattttgagttcacggaggaggaaaattatgcaggcattttccaaca |
342217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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