View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_28 (Length: 412)
Name: NF18453_low_28
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 132 - 398
Target Start/End: Original strand, 7647093 - 7647359
Alignment:
| Q |
132 |
tcttcttatatatttatttattcattcaattcaaccttaaagacacgtttatgcttgtgttggagcaacccaaccattgccacgtacttgtctcgaaggg |
231 |
Q |
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| T |
7647093 |
tcttcttatctatttatttattcattcaattcaaccttgaagacacgtttatgcttgtgttggagcaacccaaccattgccacgtacttgtctcgaaggg |
7647192 |
T |
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| Q |
232 |
atgagatcaaagtttagtgctggtggggtctctgctctatacaaccaattcagtctagtgcactccatctcttactttt-cccctctccaatatctcaaa |
330 |
Q |
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| T |
7647193 |
atgagatcaaagtttagtgctggt-gggtctctgatctatacaaccaattcagtctagtgcactccatctcttacttttccccctctccaatatctcaaa |
7647291 |
T |
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| Q |
331 |
gttttgttgatacgtacccaaacatttgtgttctatacaatcctgtacggacacttataatttcttat |
398 |
Q |
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| T |
7647292 |
gttttgttgatacggacccaaacatttgtgttctatacaatcctgtacggacacttataatttcttat |
7647359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 7646894 - 7647009
Alignment:
| Q |
14 |
tattgaacataaaataataagtaattgaagaatgctaacaacattttctttttaatattgatg------------atgaaatttatatgtcttatacttt |
101 |
Q |
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| T |
7646894 |
tattgaacataaaataataagtaattgaagaatgctaacaacattctctttttaatattggtgtactctaatcgaatgaaatttatatgtcttatatttt |
7646993 |
T |
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| Q |
102 |
aaaagtaagtcttgta |
117 |
Q |
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| T |
7646994 |
aaaagtaagtcttgta |
7647009 |
T |
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