View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_30 (Length: 400)
Name: NF18453_low_30
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 6 - 383
Target Start/End: Complemental strand, 8522398 - 8522015
Alignment:
| Q |
6 |
gagtgagatgaaggacaagaatgacgaggaaccatagttcaatcacgaatcagaattaga------tggtgcaaatgtcgtagttttattgttgtaatta |
99 |
Q |
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| T |
8522398 |
gagtgaaaagaaggacaagaatgacgaggaaccaaagttcaatcacgaatcagaatcagaatcagatggtgcaaatgtcgtagttttgttgttgtaatta |
8522299 |
T |
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| Q |
100 |
ttttctcttttgtctgttgggtttttactttctgttaaaacaagcttgactcttttgatcttgctagtttgattttcagttgtaagtttgtggtctcagg |
199 |
Q |
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| T |
8522298 |
ttttctcttttgtctgttgggtttttactttctgttaaaacaagcttgactcttttgatcttgctagtttgattttcagttgtaagtttatggtctcagg |
8522199 |
T |
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| Q |
200 |
tctgtttataagtgcacgccacatgttgtgttatataataaaattccaagttcatgtatatgttagtgtataaaatataattcaaatttatacgaccctt |
299 |
Q |
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| T |
8522198 |
tctgtttataagtgcatgccacaagttgtgttatataataaaattccaagttcatgtatatgttagtgtataaaatataattcaaatttatatgaccttt |
8522099 |
T |
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| Q |
300 |
ttacctttgttattctgttttggcttatttggtgcatagttggtacaaaattgtgttttacaaaaggtatccaatccaataaat |
383 |
Q |
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| T |
8522098 |
ttaactttgttattctgttttggcttatttggtgcataattggtacaaaattgtgttttacaaaaggtatccaatccaataaat |
8522015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 42 - 135
Target Start/End: Complemental strand, 42122739 - 42122646
Alignment:
| Q |
42 |
gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttctgtt |
135 |
Q |
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| T |
42122739 |
gttcaaccatgaatcagaatcagatggtgcaaatgtcatagttttattgttgtagttactttatctgttgtgtgttggttttttactttctgtt |
42122646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 42116966 - 42116886
Alignment:
| Q |
52 |
gaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttct |
132 |
Q |
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| T |
42116966 |
gaatcagaatcagatggtgcaaatgtcatagttttattgttgttgttattttctctattgtgtgttagttttttactttct |
42116886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 42128134 - 42128044
Alignment:
| Q |
42 |
gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttct |
132 |
Q |
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| T |
42128134 |
gttcaaccatgaatcagaatcagatggtgcaaatgtcatagttttattgttctagttattttctctattgtgtattagttttttactttct |
42128044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 367
Target Start/End: Complemental strand, 42116084 - 42115994
Alignment:
| Q |
276 |
ataattcaaatttatacgacccttttacctttgttattctgttttggcttatttggtgcatagttggtacaaaattgtgttttacaaaaggt |
367 |
Q |
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| T |
42116084 |
ataattcacatttatatgacccttttacctttgcaattctgttttggctttttttgtttgta-ttgttacagaattgtgttttagaaaaggt |
42115994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 42116854 - 42116793
Alignment:
| Q |
202 |
tgtttataagtgcacgccacatgttgtgttatataataaaattccaagttcatgtatatgtt |
263 |
Q |
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| T |
42116854 |
tgtttacatgtgcatgccacaagatgtgttatataataaaattccaagtttatatatatgtt |
42116793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 41572860 - 41572910
Alignment:
| Q |
58 |
gaattagatggtgcaaatgtcgtagttttattgttgtaattattttctctt |
108 |
Q |
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| T |
41572860 |
gaattagatggtgcagatgtgatagttttattgttctgattattttctctt |
41572910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 11117396 - 11117289
Alignment:
| Q |
42 |
gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttctg-ttaaaac |
140 |
Q |
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| T |
11117396 |
gttcaaacatgaatcagaatcagatggtgcaaatgtcatagttttattgtcgtagttactttctccgttgggtgttggttttttactttctgtttaaaat |
11117297 |
T |
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| Q |
141 |
aagcttga |
148 |
Q |
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| T |
11117296 |
aagcttga |
11117289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 25523884 - 25523943
Alignment:
| Q |
52 |
gaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgt |
112 |
Q |
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| T |
25523884 |
gaatcagaatcagatgatgcaaatgtcatagttt-attgttttagttattttctcttttgt |
25523943 |
T |
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