View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_31 (Length: 400)
Name: NF18453_low_31
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 384
Target Start/End: Complemental strand, 5396837 - 5396464
Alignment:
| Q |
12 |
atgaacaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattgatattccaggaagtgtgacaactttatccttgtta |
111 |
Q |
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|||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
5396837 |
atgagcaccagagatatgacctatagaatagactaataccataacagcaagtccccaaacaattgatattccaggaagtgtcacaactttatcattgtta |
5396738 |
T |
|
| Q |
112 |
aggttcaccaccacagcagcacatccagcaaatatcaagaagaatgttcccaccacttctgctaccaactatactcaacaatcaacgcaacacatcca-t |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |
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| T |
5396737 |
aggttcaccaccacagcagcacatccagcaaatatcaagaagaatgttcccaccacttctgctaccaactatattcaacaatcaaagcaaaacatccatt |
5396638 |
T |
|
| Q |
211 |
gtttttagtcagaagatctaattaattaaccataaacaacaattaannnnnnnggaagataaacaaaatcaccttttgcaaaagaggaacatgatcatca |
310 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5396637 |
ttttttagtgagaacatctaattaattaaccataaacaacaattaatttttttggaagataaacaaaatcaccttttgcaaaagaggaacatgatcatca |
5396538 |
T |
|
| Q |
311 |
atggttgtgtcgtcacattttttggtagcatcatcgtttacattcataaccacatcaagatttccattgctaat |
384 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5396537 |
atggttgtgtcgtcacattttttggtagcatcatcgtttatattcataaccacatcaagatttccattgctaat |
5396464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 382
Target Start/End: Original strand, 5407946 - 5408311
Alignment:
| Q |
17 |
caccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattgatattccaggaagtgtgacaactttatccttgttaaggtt |
116 |
Q |
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||||||| |||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
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| T |
5407946 |
caccagagatatgacctatagaatagactaataccataacaacaagtccccaaacaattgcaattccaggaagtgtcacaactttatcattgttaaggtt |
5408045 |
T |
|
| Q |
117 |
caccaccacagcagcacatccagcaaatatcaagaagaatgttcccaccacttctgctaccaactatactcaacaatcaacgcaacacatccatgttttt |
216 |
Q |
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|
||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5408046 |
caccaccacagaaccacatccagcaaatatcaagaagaatgttcgcaccacttctgctaccaactatactcaacaatcaacgcaacacatccatgttttt |
5408145 |
T |
|
| Q |
217 |
agtcagaagatctaattaattaaccataaacaacaattaannnnnnnggaagataaacaaaatcaccttttgcaaaagaggaacatgatcatcaatggtt |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
5408146 |
agtcagaagatctaattaattaaccataaacaacaattaattttttgaaaggataaataaagtcaccttttgcaaaaaaggaacatgatcatcaatggtt |
5408245 |
T |
|
| Q |
317 |
gtgtcgtcacattttttggtagcatcatcgtttacattcataaccacatcaagatttccattgcta |
382 |
Q |
| |
|
||| | |||||||||||| | || ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
5408246 |
gtggcatcacattttttgtttgcgccatcgtttacattcataaccacatcaagacttccattgcta |
5408311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 5388728 - 5388549
Alignment:
| Q |
12 |
atgaacaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattgatattccaggaagtgtgacaactttatccttgtta |
111 |
Q |
| |
|
|||| ||||||| || ||||||| ||| || ||||| |||||||||| || |||||||||||||| || |||||| |||| || ||||| || |||| | |
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|
| T |
5388728 |
atgagcaccagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccaggatgtgttactactttgtcattgtca |
5388629 |
T |
|
| Q |
112 |
aggttcaccaccacagcagcacatccagcaaatatcaagaagaatgttcccaccacttctgctaccaactatactcaaca |
191 |
Q |
| |
|
|| |||||||| ||||||||||| || ||||||||||||||| | || || ||||| |||||||||||||| | |||||| |
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|
| T |
5388628 |
agattcaccacaacagcagcacaccctgcaaatatcaagaagtacgtccctaccacctctgctaccaactacattcaaca |
5388549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 5402537 - 5402367
Alignment:
| Q |
12 |
atgaacaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattgatattccaggaagtgtgacaactttatccttgtta |
111 |
Q |
| |
|
|||| ||||||| || ||||||| ||| || ||||| |||||||||| || |||||||||||||| || |||||| |||| || ||||| || |||| | |
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|
| T |
5402537 |
atgagcaccagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccaggatgtgttactactttgtcattgtca |
5402438 |
T |
|
| Q |
112 |
aggttcaccaccacagcagcacatccagcaaatatcaagaagaatgttcccaccacttctgctaccaacta |
182 |
Q |
| |
|
|| |||||||| ||||||||||| || ||||||||||||||| | || || ||||| |||||||||||||| |
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|
| T |
5402437 |
agattcaccacaacagcagcacaccctgcaaatatcaagaagtacgtccctaccacctctgctaccaacta |
5402367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 5415272 - 5415101
Alignment:
| Q |
12 |
atgaacaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattgatattccaggaagtgtgacaactttatccttgtta |
111 |
Q |
| |
|
|||| ||||||| || ||||||| ||| || | ||| |||||||||| | ||||||| ||| || |||||||||||||| || || | ||| |||||| |
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|
| T |
5415272 |
atgagcaccagaaatgtgaccaacagagtaaatcaaaaccataacagtgaatccccaagcaaatgcaattccaggaagtgttactacatgatcattgtta |
5415173 |
T |
|
| Q |
112 |
aggttcaccaccacagcagcacatccagcaaatatcaagaagaatgttcccaccacttctgctaccaactat |
183 |
Q |
| |
|
|| ||||| | ||||||||||| || |||||||||| | | |||||||||||||||||||||||| |||| |
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|
| T |
5415172 |
agattcacaataacagcagcacaacccgcaaatatcatcatgtatgttcccaccacttctgctaccagctat |
5415101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 36267723 - 36267554
Alignment:
| Q |
12 |
atgaacaccagatatatgaccaatagaatagaccaataccataacagcaagtccccaaacaattgatattccaggaagtgtgacaactttatccttgtta |
111 |
Q |
| |
|
|||| ||||||| || ||||||| ||| || |||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| || || ||||| |
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|
| T |
36267723 |
atgagcaccagagatgtgaccaagagagtaaaccagcaccatcacagcaagtccccaaacaattgaaattccaggaagtgttacaacattttcattgttc |
36267624 |
T |
|
| Q |
112 |
aggttcaccaccacagcagcacatccagcaaatatcaagaagaatgttcccaccacttctgctaccaact |
181 |
Q |
| |
|
|||||||| ||| | |||||| || |||||||||||||| |||| || | ||| || |||||||||| |
|
|
| T |
36267623 |
ttgttcaccaacaccgaagcacaaccggcaaatatcaagaaatatgtgcctatcacctcagctaccaact |
36267554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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