View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_32 (Length: 399)
Name: NF18453_low_32
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 32629108 - 32628725
Alignment:
| Q |
1 |
catgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtattttatacata----actttgtaagagaaatgtttggatcatata |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
32629108 |
catgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtattttatacatacataactttgtaagagaaatgtttggatcacata |
32629009 |
T |
|
| Q |
97 |
cattaatatattgatgacacatcgttttttggttgaggtaaataagaatttgaaatgacaactacatattcatcaataaaagatagtagaattattcatg |
196 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32629008 |
tattaatatattgatgacacatcgtttcttggttgaggtaaataagaatttgacatgacaactacatattcatcaataaaagatagtagaattattcatg |
32628909 |
T |
|
| Q |
197 |
ttgagtcgacattaaccttgaaatgattaatttatcttacattgttta------tgttgttaaataatataagacaaataaattattttgattaatacta |
290 |
Q |
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||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32628908 |
atgagttgacattaaccttgaaatgattaatttgtcttacattgtttatgtttatgttgttaaataatataagacaaataaattattttg---------- |
32628819 |
T |
|
| Q |
291 |
atttagcatagataactttatctaccttttattgatggattaataagaattttcttt--tgttacttggaaagagaaaggaagcatgacgttga |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32628818 |
atttagcatagataactttatctaccttttattgatggattaataagaattttcttttatgttacttggaaagagaaaggaagcatgacgttga |
32628725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 32710167 - 32710112
Alignment:
| Q |
1 |
catgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtat |
56 |
Q |
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|||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
32710167 |
catgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggtat |
32710112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27737674 - 27737613
Alignment:
| Q |
1 |
catgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtattttata |
62 |
Q |
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|||||||||| || ||| |||| | ||||||||||||||||||||| ||||||||| ||||| |
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| T |
27737674 |
catgaatggaagccttgcagaagcaagctatgcaaacaactccttacttcaggtatattata |
27737613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8028719 - 8028773
Alignment:
| Q |
1 |
catgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggta |
55 |
Q |
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|||||||||||| |||||||||| |||||| |||| ||||||||| |||||||| |
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| T |
8028719 |
catgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
8028773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5812225 - 5812169
Alignment:
| Q |
1 |
catgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtatt |
57 |
Q |
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|||||||||| | |||| |||| | |||||||||||||||||||| |||||||||| |
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| T |
5812225 |
catgaatggaagtgttgaagaagcaagctatgcaaacaactccttgcttcaggtatt |
5812169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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