View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18453_low_34 (Length: 394)
Name: NF18453_low_34
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_34 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 49105710 - 49106097
Alignment:
| Q |
1 |
aattaataaaaaagttgaagtcttctttctttgataaacaatagagttagttgtactattataataatgtggttaacacgaaaagcaagttttattgcac |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49105710 |
aattaacaaaaaagttgaagtcttctttctttgataaacaatagagttcgttgtactattataataatgtggttaacacgaaaagcaagttttattgcac |
49105809 |
T |
|
| Q |
101 |
ggtatttcacttttcattgggtggcgtattgttaaagatgccctccttatgggcgagtcattaacttttagccattaatataataaatattataagggtt |
200 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49105810 |
ggtattacactttttattgggtggcgtattgttaaagatgccctccttatgggcgagtcattaacttttagccattaatataataaatattataagggtt |
49105909 |
T |
|
| Q |
201 |
atgccaaaaaatgttccaagagcattgtataaaaaaccacaaaaagaaatattgtcttgaaaatataattcaaacactttttaaagtaattaattcacaa |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49105910 |
atgccaaaaaatgttctaagagcattgtataaaaaaccataaaaagaaatattgtcttgaaaatataattcaaacactttttaaagtaattaattcacaa |
49106009 |
T |
|
| Q |
301 |
ctttctttacaaaaataacctcttttgagtgtttaaacaacacaaatacgacacttgttggcattttccatattaaaatcacgtggat |
388 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49106010 |
ctttctatacaaaaataacctcttttgagtgtttaaacaacacatttacaacacttgttggcattttccatattaaaatcatgtggat |
49106097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 41735439 - 41735488
Alignment:
| Q |
238 |
cacaaaaagaaatattgtcttgaaaatataattcaaacactttttaaagt |
287 |
Q |
| |
|
||||||||||||| ||||||||||||| || |||||||||| ||||||| |
|
|
| T |
41735439 |
cacaaaaagaaattatgtcttgaaaatacaagtcaaacacttgttaaagt |
41735488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 29235634 - 29235594
Alignment:
| Q |
237 |
ccacaaaaagaaatattgtcttgaaaatataattcaaacac |
277 |
Q |
| |
|
|||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
29235634 |
ccacaaaaagaaattttgtcttgaaaatagaagtcaaacac |
29235594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 31861652 - 31861608
Alignment:
| Q |
241 |
aaaaagaaatattgtcttgaaaatataattcaaacactttttaaa |
285 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||| ||||| |
|
|
| T |
31861652 |
aaaaagaaattatgtcttgaaaatataagtcaaacacttgttaaa |
31861608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 433979 - 433929
Alignment:
| Q |
237 |
ccacaaaaagaaatattgtcttgaaaatataattcaaacactttttaaagt |
287 |
Q |
| |
|
||||||||| |||| |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
433979 |
ccacaaaaaaaaattatgtcttgaaaatataagtcaaacacttgttaaagt |
433929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 24999494 - 24999444
Alignment:
| Q |
237 |
ccacaaaaagaaatattgtcttgaaaatataattcaaacactttttaaagt |
287 |
Q |
| |
|
|||||||||||||| ||||||||||||| || |||||||||| ||||||| |
|
|
| T |
24999494 |
ccacaaaaagaaattatgtcttgaaaatacaagtcaaacacttgttaaagt |
24999444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 36903974 - 36904024
Alignment:
| Q |
237 |
ccacaaaaagaaatattgtcttgaaaatataattcaaacactttttaaagt |
287 |
Q |
| |
|
|||||||||||||| ||||||||||||| || |||||||||| ||||||| |
|
|
| T |
36903974 |
ccacaaaaagaaattatgtcttgaaaatacaagtcaaacacttattaaagt |
36904024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 31191369 - 31191434
Alignment:
| Q |
222 |
gcattgtataaaaaaccacaaaaagaaatattgtcttgaaaatataattcaaacactttttaaagt |
287 |
Q |
| |
|
||||||| ||| ||||| |||||||||| || ||||||||||||| |||||||||| ||||||| |
|
|
| T |
31191369 |
gcattgtttaaggaaccataaaaagaaattatgccttgaaaatataagtcaaacacttgttaaagt |
31191434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 10624932 - 10625000
Alignment:
| Q |
212 |
tgttccaagagcattgtataaaaaacc-acaaaaagaaatattgtcttgaaaatataattcaaacactt |
279 |
Q |
| |
|
||||| ||| ||||||| |||| |||| |||||||||||| ||||||||||||| || |||||||||| |
|
|
| T |
10624932 |
tgttctaagggcattgtttaaagaacccacaaaaagaaattatgtcttgaaaatacaagtcaaacactt |
10625000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University