View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_35 (Length: 393)
Name: NF18453_low_35
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 6 - 362
Target Start/End: Complemental strand, 33251881 - 33251521
Alignment:
| Q |
6 |
attacaaacatcattgtgttgatcaatcacgactcatgcttgtgtgtttcatctgtacagtaatgatgtaataatatacttcttatagggtagtggaacc |
105 |
Q |
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| T |
33251881 |
attacaaacatcattgtgttgatcaatcacgactcatgcttgtatgtttcatctgtacagtaatgatgtaataatatacttcttatagggtagtggaacc |
33251782 |
T |
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| Q |
106 |
tataaagttaaaaaacgactcatgcctagtcatgatagttacatgtgctagcatccatatatactatcat---catctccttcta-agatatatcaagac |
201 |
Q |
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| T |
33251781 |
tataaagttaaaaaacgactcatgcctagtcatgatagttacatgtgctagcatccatatatactatcatcatcatctccttctagggatatatcaagac |
33251682 |
T |
|
| Q |
202 |
ttcttatagacaggataatcggaatatcctgcattcacatgattaggacactggtaaccgttgaattaagatcagacagtttagtcgcatatttaatata |
301 |
Q |
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| T |
33251681 |
ttcttatagacgggataatcgggatacccttcattcatatggttaggacactggtaatcgttgaattaaaatcagacagtttagtcgcgtatttaatata |
33251582 |
T |
|
| Q |
302 |
ttgtctggtctgaattcaacggttatcaattcgtgaatgctgctgcgatatctcaactata |
362 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
33251581 |
ttatctggtctgaattcaacgattatcaattcgtgaatgctgctgccatatctcaactata |
33251521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 33265922 - 33265839
Alignment:
| Q |
77 |
taatatacttcttatagggtagtggaacctataaagtta-aaaaacgactcatgcctagtcatgatagttacatgtgctagcat |
159 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||| | ||||||||| |||||||| ||||||| || ||||| |
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| T |
33265922 |
taatatacttcttataaggtagtggaacctataaagttagaaaaactattcatgcctactcatgatatttacatgcgccagcat |
33265839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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