View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18453_low_36 (Length: 390)

Name: NF18453_low_36
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18453_low_36
NF18453_low_36
[»] chr1 (10 HSPs)
chr1 (17-165)||(47488758-47488912)
chr1 (17-165)||(11821311-11821465)
chr1 (18-165)||(45688481-45688634)
chr1 (47-161)||(50068999-50069119)
chr1 (17-165)||(17696361-17696516)
chr1 (229-281)||(11821528-11821579)
chr1 (229-285)||(50068877-50068932)
chr1 (229-285)||(47488638-47488693)
chr1 (229-281)||(17696579-17696630)
chr1 (120-165)||(27037683-27037730)
[»] chr7 (11 HSPs)
chr7 (17-162)||(30359857-30360008)
chr7 (13-165)||(26603944-26604102)
chr7 (27-165)||(48221475-48221629)
chr7 (16-102)||(20379462-20379556)
chr7 (71-161)||(2355658-2355754)
chr7 (229-285)||(2355820-2355875)
chr7 (229-285)||(26603826-26603881)
chr7 (229-285)||(30360076-30360131)
chr7 (229-285)||(48221355-48221410)
chr7 (230-285)||(18146494-18146548)
chr7 (229-275)||(20379306-20379351)
[»] chr3 (16 HSPs)
chr3 (17-165)||(47065017-47065171)
chr3 (17-165)||(53827432-53827586)
chr3 (17-165)||(44836222-44836384)
chr3 (44-142)||(42950808-42950912)
chr3 (60-165)||(33449887-33449995)
chr3 (96-165)||(42950744-42950813)
chr3 (229-285)||(33449770-33449825)
chr3 (229-285)||(53827314-53827369)
chr3 (229-285)||(42381820-42381875)
chr3 (229-285)||(42382600-42382655)
chr3 (229-285)||(44836102-44836157)
chr3 (229-285)||(47065236-47065291)
chr3 (98-142)||(42381740-42381784)
chr3 (67-102)||(19234558-19234593)
chr3 (229-260)||(42950651-42950682)
chr3 (229-285)||(33449619-33449674)
[»] chr8 (6 HSPs)
chr8 (13-165)||(33800267-33800427)
chr8 (17-165)||(28706876-28707032)
chr8 (17-165)||(43640747-43640911)
chr8 (229-285)||(28706757-28706812)
chr8 (229-285)||(33800149-33800204)
chr8 (229-285)||(43640626-43640681)
[»] chr4 (6 HSPs)
chr4 (17-164)||(33164275-33164430)
chr4 (20-165)||(46817233-46817386)
chr4 (13-96)||(36218019-36218102)
chr4 (47-147)||(55312298-55312404)
chr4 (231-285)||(33164157-33164210)
chr4 (51-126)||(36172321-36172402)
[»] chr5 (7 HSPs)
chr5 (20-165)||(40008868-40009019)
chr5 (17-165)||(3458135-3458291)
chr5 (26-161)||(19399685-19399828)
chr5 (229-285)||(3458355-3458410)
chr5 (229-285)||(19399895-19399950)
chr5 (229-285)||(40009079-40009134)
chr5 (229-285)||(17367223-17367278)
[»] chr6 (5 HSPs)
chr6 (17-165)||(35060688-35060852)
chr6 (229-285)||(35060570-35060625)
chr6 (124-165)||(14483510-14483551)
chr6 (229-285)||(28050935-28050990)
chr6 (127-165)||(28050835-28050873)
[»] scaffold1763 (2 HSPs)
scaffold1763 (18-165)||(118-271)
scaffold1763 (229-283)||(1-54)
[»] chr2 (10 HSPs)
chr2 (13-165)||(22492595-22492755)
chr2 (13-165)||(37892791-37892937)
chr2 (17-165)||(42119348-42119511)
chr2 (17-165)||(12969029-12969189)
chr2 (69-165)||(17796854-17796956)
chr2 (13-87)||(30760341-30760415)
chr2 (229-285)||(12968912-12968967)
chr2 (229-285)||(22492816-22492871)
chr2 (231-285)||(42119576-42119629)
chr2 (229-285)||(17796729-17796784)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 47488912 - 47488758
Alignment:
Q  17 cagaacctcattctgcatcattttcaaaca------acacacacacaaatctcaattttctctcaaattacccaactccaaaattctttcaaattaaata 110  Q
    ||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  47488912 cagaacctcattctgcatcattttcaaacacaacacacacacacacaaatctcaattttctctcaaattacccaactccaaaattccttcaaatcaaata 47488813  T
Q  111 acactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    | |||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  47488812 atactccaacaataagaacaagtaagctttcacttaaattatgttggtatgatag 47488758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 11821311 - 11821465
Alignment:
Q  17 cagaacctcattctgcatcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattc------tttcaaattaaata 110  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||       ||||||||||| |    
T  11821311 cagaacctcattctgcatcattttcaaacaacacacacataaatctcaattttctctcaaattacccaactctaaaattccttcaacttcaaattaaaca 11821410  T
Q  111 acactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    | |||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  11821411 agactccaacaacaagaataagtaagctttcacttaaattatgttggtatgatag 11821465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 45688481 - 45688634
Alignment:
Q  18 agaacctcattctgcatcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattc------tttcaaattaaataa 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||       ||||||| ||| ||    
T  45688481 agaacctcattctgcctcattttcaaacaacacacacacaaatctcatttttctctcaaattatccaactccaaaattccttcaacttcaaatcaaacaa 45688580  T
Q  112 cactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  45688581 cactccaacaacaagaacaagtaagttttcacttaaattatgttggtatgatag 45688634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 50069119 - 50068999
Alignment:
Q  47 acacacacacaaatctcaattttctctcaaattacccaactccaaaattctttcaaatt------aaataacactccaacaacaagaacaagtaaacttt 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||      ||| |||||||||||||||||||||||||| ||||    
T  50069119 acacacacacaaatctcaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagcttt 50069020  T
Q  141 cacttaaattatgttggtatg 161  Q
    |||||||||||||||||||||    
T  50069019 cacttaaattatgttggtatg 50068999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 17696361 - 17696516
Alignment:
Q  17 cagaacctcattctgcatcattttcaaacaacacacacacaaa-tctcaattttctctcaaattacccaactccaaaattctttcaaatt------aaat 109  Q
    |||| ||||||||||| |||||||||||||||| ||||  ||| |||||||| | |||||||||| |||||| |||||||| ||||| ||      |||     
T  17696361 cagagcctcattctgcctcattttcaaacaacatacacttaaaatctcaattctttctcaaattatccaacttcaaaattccttcaacttcaaatcaaac 17696460  T
Q  110 aacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    ||||||||||||||||||| || ||| |||||||||||| ||||||||||||||||    
T  17696461 aacactccaacaacaagaaaaaataagctttcacttaaaatatgttggtatgatag 17696516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 11821528 - 11821579
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgtta 281  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11821528 gcaagaaatgatagaatgttacatgcaaatg-acttatagtacttaattgtta 11821579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 50068932 - 50068877
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  50068932 gcaagaaatgatagaatgttacatgcaaatg-acttatagtgcttaattgttatgat 50068877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 47488693 - 47488638
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||    
T  47488693 gcaagaaatgatagaatattacatgcaaatg-acttatagtgcttaattgttatgat 47488638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 17696579 - 17696630
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgtta 281  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||    
T  17696579 gcaagaaatgatagaatgttacatgcaaatg-acttatagtgcttagttgtta 17696630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 27037730 - 27037683
Alignment:
Q  120 caacaagaacaagtaaactttcacttaaa--ttatgttggtatgatag 165  Q
    |||||||||||||||| ||||||||||||   ||||||||||||||||    
T  27037730 caacaagaacaagtaagctttcacttaaactatatgttggtatgatag 27037683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 30359857 - 30360008
Alignment:
Q  17 cagaacctcattctgcatcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattc------tttcaaattaaata 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| ||| |    
T  30359857 cagaacctcattctgcctcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattccttgaacttcaaatcaaaca 30359956  T
Q  111 acactccaacaacaagaacaagtaaactttcacttaaattatgttggtatga 162  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  30359957 acactccaacaacaagaataagtaagctttcacttaaattatgttggtatga 30360008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 26604102 - 26603944
Alignment:
Q  13 cagacagaacctcattctgcatcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattc------tttcaaatta 106  Q
    |||||| |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||       ||||||| |    
T  26604102 cagacataacctcgttctgcctcattttcaaacaacacacacacaaatatcaattttctctcaaattactcaactccaaaattccttcaacttcaaatca 26604003  T
Q  107 aataacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    || |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  26604002 aacaacactccaacaacaagaacaagtaagctttaacttaaattatgttggtatgatag 26603944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 48221629 - 48221475
Alignment:
Q  27 ttctgcatcattttcaaacaacacacaca--caaatctcaattttctctcaaattacccaactccaaaattctttcaaattaaa--------------ta 110  Q
    |||||| ||||||||||||||||||||||  ||||| ||| ||||||||||||||||||||||||||||||| ||||| || ||              ||    
T  48221629 ttctgcctcattttcaaacaacacacacatacaaatttcatttttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactcta 48221530  T
Q  111 acactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48221529 acactccaacaacaagaacaagtaagctttcacttaaattatgttggtatgatag 48221475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 20379556 - 20379462
Alignment:
Q  16 acagaacctcattctgcatcattttcaaacaacacac--------acacaaatctcaattttctctcaaattacccaactccaaaattctttcaa 102  Q
    ||||||||||||||||| |||||||||||||||||||        |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  20379556 acagaacctcattctgcctcattttcaaacaacacacgcacacaaacacaaatctcatttttctctcaaattacccaactccaaaattccttcaa 20379462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 2355658 - 2355754
Alignment:
Q  71 tctcaaattacccaactccaaaattctttcaaatt------aaataacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatg 161  Q
    |||||||||| ||||||||||||||| ||||| ||      ||| |||||||||||||||| | ||||||| |||||||||||||||||||||||||    
T  2355658 tctcaaattatccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaacatcaagtaagctttcacttaaattatgttggtatg 2355754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 2355820 - 2355875
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  2355820 gcaagaaatgatagaatgttacatgcaaatg-acttatagtgcttaattgttatgat 2355875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 26603881 - 26603826
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  26603881 gcaagaaatgatagaatgttacatgcaaat-aacttatagtgcttaattgttatgat 26603826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 30360076 - 30360131
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  30360076 gcaagaaatgagagaatgttacatgcaaatg-acttatagtgcttaattgttatgat 30360131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 48221410 - 48221355
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||    
T  48221410 gcaagaaatgatagaatgttatatgcaaatg-acttatagtgcttaattgttatgat 48221355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 18146494 - 18146548
Alignment:
Q  230 caagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    |||||||||||| ||||||||||| ||||||| ||||| | |||||||||||||||    
T  18146494 caagaaatgatacaatgttacatgtaaatgaa-ttatattgcttaattgttatgat 18146548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 20379351 - 20379306
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaa 275  Q
    |||| |||||||||||||||||||||||||| ||||||||| |||||    
T  20379351 gcaaaaaatgatagaatgttacatgcaaatg-acttatagtgcttaa 20379306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 47065017 - 47065171
Alignment:
Q  17 cagaacctcattctgcatcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattc------tttcaaattaaata 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||       ||||||| ||| |    
T  47065017 cagaacctcattctgcctcattttcaaacaacacacacacaaatctcaattttctcttaaattatccaactccaaaattccttcaacttcaaatcaaaca 47065116  T
Q  111 acactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47065117 acactccaacaacaagaacaagtaagctttcacttaaattatgttggtatgatag 47065171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 53827586 - 53827432
Alignment:
Q  17 cagaacctcattctgcatcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattc------tttcaaattaaata 110  Q
    |||||||||||  |||||||||||||||||  ||||||||| ||||||||||||||||||||||  ||||||||||||||       ||||||| ||| |    
T  53827586 cagaacctcatcgtgcatcattttcaaacacaacacacacagatctcaattttctctcaaattatgcaactccaaaattccttcaacttcaaatcaaaca 53827487  T
Q  111 acactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    |||||  |||||||||||||||||| |||||||||||||||||||||||||||||    
T  53827486 acactaaaacaacaagaacaagtaagctttcacttaaattatgttggtatgatag 53827432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 44836384 - 44836222
Alignment:
Q  17 cagaacctcattctgcatcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattctttcaaatt-aaat------ 109  Q
    |||||||||||||||| |||||||||||||  |||||||||||||| |||||||||||||||||||||||| |||||||| ||||| || ||||          
T  44836384 cagaacctcattctgcctcattttcaaacacaacacacacaaatcttaattttctctcaaattacccaacttcaaaattccttcaacttcaaatcaaaca 44836285  T
Q  110 -------aacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44836284 acactccaacactccaacaacaagaacaagtaagctttcacttaaattatgttggtatgatag 44836222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 42950912 - 42950808
Alignment:
Q  44 acaacacacacacaaatctcaattttctctcaaattacccaactccaaaattc------tttcaaattaaataacactccaacaacaagaacaagtaaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| ||| |||||||||||||||||||||||||| |    
T  42950912 acaacacacacacaaatctcaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagc 42950813  T
Q  138 tttca 142  Q
    |||||    
T  42950812 tttca 42950808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 33449995 - 33449887
Alignment:
Q  60 tctcaattttctctcaaattacccaactccaaaattctttcaa---attaaataacactccaacaacaagaacaagtaaactttcacttaaattatgttg 156  Q
    |||||| | |||||||||||||||||||||||||||| |||||   || ||| |||||||||| ||||||||||||||| |||||||||| |||||||||    
T  33449995 tctcaaatctctctcaaattacccaactccaaaattccttcaacaaatcaaacaacactccaataacaagaacaagtaagctttcacttatattatgttg 33449896  T
Q  157 gtatgatag 165  Q
    |||||||||    
T  33449895 gtatgatag 33449887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 42950813 - 42950744
Alignment:
Q  96 ctttcaaattaaataacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    ||||||||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  42950813 ctttcaaatcaaacaacactccaacaacaagaacaagtaagctttcccttaaattatgttggtatgatag 42950744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 33449825 - 33449770
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  33449825 gcaagaaatgatagaatgttacatgcaaatg-acttatagtgcttaattgttatgat 33449770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 53827369 - 53827314
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  53827369 gcaagaaatgatagaatgttacatgcaaatg-acttatagtgcttaattgttatgat 53827314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 42381820 - 42381875
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||||||||||||||||||||| | ||||| | |||||||||||||||    
T  42381820 gcaagaaatgatagaatgttacatgcaaatg-atttatattgcttaattgttatgat 42381875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 42382600 - 42382655
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||||||||||||||||||||| | ||||| | |||||||||||||||    
T  42382600 gcaagaaatgatagaatgttacatgcaaatg-atttatattgcttaattgttatgat 42382655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 44836157 - 44836102
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||| ||||||||||||||||||||| | ||||||| |||||||||||||||    
T  44836157 gcaagaaattatagaatgttacatgcaaatg-atttatagtgcttaattgttatgat 44836102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 47065236 - 47065291
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||| ||||||||||||||||||||||||| ||||||||| ||||||| |||||||    
T  47065236 gcaagtaatgatagaatgttacatgcaaatg-acttatagtgcttaattattatgat 47065291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 42381740 - 42381784
Alignment:
Q  98 ttcaaattaaataacactccaacaacaagaacaagtaaactttca 142  Q
    ||||||| ||| |||||||||||||||||||||||||| ||||||    
T  42381740 ttcaaatcaaacaacactccaacaacaagaacaagtaagctttca 42381784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 19234558 - 19234593
Alignment:
Q  67 tttctctcaaattacccaactccaaaattctttcaa 102  Q
    ||||||||||||||||||| ||||||||||||||||    
T  19234558 tttctctcaaattacccaaatccaaaattctttcaa 19234593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 260
Target Start/End: Complemental strand, 42950682 - 42950651
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatga 260  Q
    ||||||||||||||||||||||||||||||||    
T  42950682 gcaagaaatgatagaatgttacatgcaaatga 42950651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 33449674 - 33449619
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    |||||| |||||| ||| ||||||||||||| ||||||| | |||||||||||||||    
T  33449674 gcaagatatgatacaatcttacatgcaaatg-acttatattgcttaattgttatgat 33449619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 33800427 - 33800267
Alignment:
Q  13 cagacagaacctcattctgcatcattttcaaaca--acacacacacaaatctcaattttctctcaaattacccaactccaaaattc------tttcaaat 104  Q
    |||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||       |||||||    
T  33800427 cagacataacctcattctgcatcattttcaaacacaacacacacacaaatctcaattttctctcaaattacccaacttcaaaattccttcaacttcaaat 33800328  T
Q  105 taaataacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
     ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33800327 caaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggtatgatag 33800267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 28707032 - 28706876
Alignment:
Q  17 cagaacctcattctgcatcattttcaaaca--acacacacacaaatctcaattttctctcaaattacccaactccaaaattc------tttcaaattaaa 108  Q
    |||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| | ||||||||       ||||||| |||    
T  28707032 cagaacctcattatgcatcattttcaaacacaacacacacacaaatctcaattttctctcaaattacccaagttcaaaattccttcaacttcaaatcaaa 28706933  T
Q  109 taacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
     ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  28706932 caacactccaacaacaagaacaggtaagctttcacttaaattatgttggtatgatag 28706876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 43640911 - 43640747
Alignment:
Q  17 cagaacctcattctgcatcattttcaaaca--acacacacacaaatctcaattttctctcaaattacccaactccaaaattctttcaaatt-aaat---- 109  Q
    ||||||| |||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||        
T  43640911 cagaaccacattctgcctcattttcaaacacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaa 43640812  T
Q  110 ---------aacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
             ||| ||||||||||||||||||||||  ||||||||||||||| |||||| |||||    
T  43640811 caaccctccaaccctccaacaacaagaacaagtaagttttcacttaaattatattggtaggatag 43640747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 28706812 - 28706757
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||    
T  28706812 gcaagaaataatagaatgttacatgcaaatg-acttatagtgcttaattgttatgat 28706757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 33800204 - 33800149
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||    
T  33800204 gcaagaaatcatagaatgttacatgcaaatg-acttatagtgcttaattgttatgat 33800149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 43640681 - 43640626
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    |||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||    
T  43640681 gcaagaaatgatagaatgttacatacaaatg-acttatagtgcttaattgttatgat 43640626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 33164430 - 33164275
Alignment:
Q  17 cagaacctcattctgcatcattttcaaaca--acacacacacaaatctcaattttctctcaaattacccaactccaaaattc------tttcaaattaaa 108  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||    
T  33164430 cagaacctcattctgcatcattttcaaacacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaa 33164331  T
Q  109 taacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgata 164  Q
     |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  33164330 caacactccaacaacaagaacaagtaagctttcacgtaaattatgttggtatgata 33164275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 46817386 - 46817233
Alignment:
Q  20 aacctcattctgcatcattttcaaaca--acacacacacaaatctcaattttctctcaaattacccaactccaaaattctttcaaatt------aaataa 111  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||| || |||||| |||||| |||||||| ||||| ||      ||| ||    
T  46817386 aacctcattctgcatcattttcaaacacaacacacacacaaatctcaattttcactaaaattatccaacttcaaaattccttcaacttcaaatcaaacaa 46817287  T
Q  112 cactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46817286 cactccaacaacaagaacaagtaagctttcacttaaattatgttggtatgatag 46817233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 36218019 - 36218102
Alignment:
Q  13 cagacagaacctcattctgcatcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattc 96  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  36218019 cagacagaacctcattctgcctcattttcaaacacaacacacacaaatctcaattttctctcaaaataccaaactccaaaattc 36218102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 55312298 - 55312404
Alignment:
Q  47 acacacacacaaatctcaattttctctcaaattacccaactccaaaattc------tttcaaattaaataacactccaacaacaagaacaagtaaacttt 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||| ||| || |||||||||| |||||||| ||| ||||    
T  55312298 acacacacacaaatctcaattttctctcaaattacccaactccaaaattccttcaatttcaaatcaaacaatactccaacaaaaagaacaaataagcttt 55312397  T
Q  141 cacttaa 147  Q
    |||||||    
T  55312398 cacttaa 55312404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 33164210 - 33164157
Alignment:
Q  231 aagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  33164210 aagaaatgatagaatgttacatgcaaatg-acttatagtgcttaattgttatgat 33164157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 36172321 - 36172402
Alignment:
Q  51 acacacaaatctcaattttctctcaaattacccaactccaaaattc------tttcaaattaaataacactccaacaacaag 126  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||       ||||||| ||| |||||||||||||||||    
T  36172321 acacacaaatctcatttttctcttaaattacccaactccaaaattcctataacttcaaatcaaacaacactccaacaacaag 36172402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 40008868 - 40009019
Alignment:
Q  20 aacctcattctgcatcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattctttcaaatt-aaat-----aaca 113  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || ||||      |||    
T  40008868 aacctcattctgcatcattttcaaacacaacacacacaaatctcaattttctctcaaattatccaactccaaaattccttcaacttcaaatcatacgaca 40008967  T
Q  114 ctccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40008968 ctccaacaacaagaacaagtaagctttcacttaaattatgttggtatgatag 40009019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 3458135 - 3458291
Alignment:
Q  17 cagaacctcattctgcatcattttcaaaca--acacacacacaaatctcaattttctctcaaattacccaactccaaaattc------tttcaaattaaa 108  Q
    |||||||||||| ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||    
T  3458135 cagaacctcattatgcatcactttcaaacacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaa 3458234  T
Q  109 taacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
     |||||||||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  3458235 caacactccaacaacaaaaacaagtaagctatcacttaaattatgttggtatgatag 3458291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 19399685 - 19399828
Alignment:
Q  26 attctgcatcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattcttt--------caaattaaataacactcc 117  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||        ||||| ||| |||||| |    
T  19399685 attctgcctcattttcaaacaacacacacacaaatctcatttttctctcaaattacccaactccaaaattcctttaacttcacaaatcaaacaacacttc 19399784  T
Q  118 aacaacaagaacaagtaaactttcacttaaattatgttggtatg 161  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  19399785 aacaacaagaacaagtaagttttcacttaaattatgttggtatg 19399828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 3458355 - 3458410
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  3458355 gcaagaaatgatagaatgttacatgcaaatg-acttatagtgcttaattgttatgat 3458410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 19399895 - 19399950
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  19399895 gcaagaaatgatagaatgttacatgcaaatg-acttatagtgcttaattgttatgat 19399950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 40009079 - 40009134
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  40009079 gcaagagatgatagaatgttacatgcaaatg-acttatagtgcttaattgttatgat 40009134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 17367278 - 17367223
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||    
T  17367278 gcaagaaatgatacaatgttacatgtaaat-aacttatagtgcttaattgttatgat 17367223  T

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Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 35060852 - 35060688
Alignment:
Q  17 cagaacctcattctgcatcattttcaaaca--acacacacacaaatctcaattttctctcaaattacccaactccaaaattctttcaaatt-aaat---- 109  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||        
T  35060852 cagaacctcattctgcatcattttcaaacacaacacacacacaaatctcaattttctctcaaattacccaactccataattccttcaacttcaaatcaaa 35060753  T
Q  110 ---------aacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35060752 caacactccaacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 35060688  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 35060625 - 35060570
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  35060625 gcaagaaatgataaaatgttacatgcaaatg-acttatagtgcttaattgttatgat 35060570  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 14483551 - 14483510
Alignment:
Q  124 aagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  14483551 aagaacaagtaagttttcacttaaattatgttggtatgatag 14483510  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 28050935 - 28050990
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||| ||||||||||| ||||| ||||||| | |||||||||||||||    
T  28050935 gcaagaaatgatacaatgttacatgtaaatg-acttatattgcttaattgttatgat 28050990  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 28050835 - 28050873
Alignment:
Q  127 aacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  28050835 aacaagtaagttttcacttaaattatgttggtatgatag 28050873  T

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Target: scaffold1763 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 271 - 118
Alignment:
Q  18 agaacctcattctgcatcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaactccaaaa-ttct-----ttcaaattaaataa 111  Q
    |||||||||| |||| |||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||     ||||||| ||| ||    
T  271 agaacctcatcctgcctcattttcaaacaacagacacacacatctcaattttctctcaaattatccaactccaaaatttcttcaacttcaaatcaaacaa 172  T
Q  112 cactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    ||||||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  171 cactccagcaacaagaacaagtatgctttcacttaaattatgttggtatgatag 118  T

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Target: scaffold1763; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 54 - 1
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatg 283  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  54 gcaagaaatgatagaatgttacatgcaaatg-acttatagtgcttaattgttatg 1  T

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Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 22492595 - 22492755
Alignment:
Q  13 cagacagaacctcattctgcatcattttcaaaca--acacacacacaaatctcaattttctctcaaattacccaactccaaaattc------tttcaaat 104  Q
    |||||||||||||||   ||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||    
T  22492595 cagacagaacctcatcaagcatcattttcaaacacaacacacacacaaatctcaattttctctcaaattatccaactccaaaattccttcaacttcaaat 22492694  T
Q  105 taaataacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
     ||| |||||||||||||||||||||| ||| |||||| |||||||||||| |||||||||    
T  22492695 caaacaacactccaacaacaagaacaaataagctttcatttaaattatgttagtatgatag 22492755  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 37892937 - 37892791
Alignment:
Q  13 cagacagaacctcattctgcatcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattctttcaaattaaataac 112  Q
    |||||||||||||||| ||| ||||| ||||| |||||||||| ||||||||||||||||| |||||| |||||||||||||||  |||| ||      |    
T  37892937 cagacagaacctcattgtgcctcattctcaaataacacacacataaatctcaattttctctaaaattagccaactccaaaattccctcaactt------c 37892844  T
Q  113 actccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
    | ||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  37892843 aatccaacaacaagaacaagtaagctttgacttaaattatgttggtatgatag 37892791  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 42119348 - 42119511
Alignment:
Q  17 cagaacctcattctgcatcattttcaaaca--acacacacacaaatctcaattttctctcaaattacccaactccaaaattctttcaaatt-aaat---- 109  Q
    |||||||||||  |||||||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||||||| ||||| || ||||        
T  42119348 cagaacctcatcatgcatcattttcaaacacaacacacacacaaatctcaattttctctcaaattttccaactccaaaattccttcaacttcaaatcaaa 42119447  T
Q  110 ---------aacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
             |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  42119448 caatattccaacactccaacaacaagaacaa-taagctttcacttaaattatgttggtatgatag 42119511  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 12969189 - 12969029
Alignment:
Q  17 cagaacctcattctgcatcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattctttcaaatt-aaat------ 109  Q
    |||| ||||||||||| ||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||||||| ||||| || ||||          
T  12969189 cagagcctcattctgcctcattttcaaacaacacacaca--aatctcatttttctctcaaattacctaactccaaaattccttcaacttcaaatcaaaca 12969092  T
Q  110 -------aacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatgatag 165  Q
           |||| |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  12969091 acactccaacattccaacaacaagaacaagtaatttttcacttaaattatgttggtatgatag 12969029  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 17796956 - 17796854
Alignment:
Q  69 tctctcaaattacccaactccaaaattctttcaa------attaaataacactccaacaacaagaacaagtaaactttcacttaaattatgttggtatga 162  Q
    ||||||||||||||||| |||||||||| |||||      |||||| ||||||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  17796956 tctctcaaattacccaaatccaaaattccttcaacttcaaattaaacaacactccaacaacaagaacacgtaagttttcacttaaattatgttggtatga 17796857  T
Q  163 tag 165  Q
    |||    
T  17796856 tag 17796854  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 30760341 - 30760415
Alignment:
Q  13 cagacagaacctcattctgcatcattttcaaacaacacacacacaaatctcaattttctctcaaattacccaact 87  Q
    ||||||||| |||||| | ||||||||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  30760341 cagacagaatctcattatacatcatttttaaacacaacacacacaaatctcaattttctctcaaattacccaact 30760415  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 12968967 - 12968912
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  12968967 gcaagaaatgatagaatgttacatgcaaatg-acttatagtgcttaattgtaatgat 12968912  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 22492816 - 22492871
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||    
T  22492816 gcaagaaatgatagaatgttacatgcaaatg-agttatagtgcttaattgttatgat 22492871  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 42119576 - 42119629
Alignment:
Q  231 aagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  42119576 aagaaatgatagaatgttacatgcaaatg-acttatagtgtttaattgttatgat 42119629  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 17796784 - 17796729
Alignment:
Q  229 gcaagaaatgatagaatgttacatgcaaatgaacttatagtacttaattgttatgat 285  Q
    ||||||||||||| ||||||||||| ||||| |||| |||| |||||||||||||||    
T  17796784 gcaagaaatgataaaatgttacatgtaaatg-acttgtagtgcttaattgttatgat 17796729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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