View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_38 (Length: 380)
Name: NF18453_low_38
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 46092101 - 46091817
Alignment:
| Q |
14 |
cctgtgaagcagcatctacaagagcagataggattgcattatctcttgctttttcaacatgagaagatctaatattgttagcatagagcttcacactttc |
113 |
Q |
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| T |
46092101 |
cctgtgaagcagcatctacaagagcagataggattgcattatctcttgctttttcaacatgagaagatctaatattgttagcatagagcttcacactttc |
46092002 |
T |
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| Q |
114 |
cttgaccccacatgctaaagttccagagcccatatcaaagcaatttaagaatgtaaacttcccacttttggatgatgtattcttgccaacaagctccctg |
213 |
Q |
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| T |
46092001 |
cttgaccccacatgctaaagttccagagcccatatcaaagcaatttaagaatgtaaacttcccacttttggatgatgtattcttgccaacaagctccctg |
46091902 |
T |
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| Q |
214 |
cattttttagctgaatagagaaaacattttatgagcataagcaaaaaattataattaatgaaatgacctccatagtcaaagatag |
298 |
Q |
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| T |
46091901 |
cattttttagctgaatagagaaaacattttatgagcataagcaaaaaattataattaatgaaatgacctccatagtcaaagatag |
46091817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 46086998 - 46086737
Alignment:
| Q |
14 |
cctgtgaagcagcatctacaagagcagataggattgcattatctcttgctttttcaacatgagaagatctaatattgttagcatagagcttcacactttc |
113 |
Q |
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| T |
46086998 |
cctgtgaagcagcatcaacaagagcagattggattgcatcatgtcttgctttttcaacatgagcagatctaatattgttaacatagagcttcacactttc |
46086899 |
T |
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| Q |
114 |
cttgaccccacatgctaaagttccagagcccatatcaaagcaatttaagaatgtaaacttcccacttttggatgatgtattcttgccaacaagctccctg |
213 |
Q |
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| T |
46086898 |
tttaaccccacatgctaaacttccagagcccaaatcaaagcaatttaataatgtaaacttcccacttttggatgacgcgttctcgccaacaagctccctg |
46086799 |
T |
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| Q |
214 |
cattttttagctgaatagagaaaacattttatgagcataagcaaaaaattataattaatgaaa |
276 |
Q |
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| T |
46086798 |
catttttcagctgaacggagaaaacagtgtgtgatcataaac-agaaattatagttaatgaaa |
46086737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 295 - 362
Target Start/End: Complemental strand, 46091782 - 46091715
Alignment:
| Q |
295 |
atagtcgttaaactaattatcacatcacaccaaatgtctatttggattaacttatttgagctcatcta |
362 |
Q |
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| T |
46091782 |
atagtcgttatactaattatcacatcacaccaaatgtctatttggattaacttatttgagctcatcta |
46091715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 37476647 - 37476477
Alignment:
| Q |
58 |
cttgctttttcaacatgagaagatctaatattgttagcatagagcttcacactttccttgaccccacatgctaaagttccagagcccatatcaaagcaat |
157 |
Q |
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| T |
37476647 |
cttgctttttcaacatgagtagatctaatactgtaaaaatagagtttgacgccttctttgacagcacatgccaacgttccagaacccatgtcaaaacagt |
37476548 |
T |
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| Q |
158 |
ttaagaatgtaaacttcccacttttggatgatgtattcttgccaacaagctccctgcattttttagctgaa |
228 |
Q |
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|||| ||||| ||||| ||||| | |||||| | || ||||| ||||||||||||||||| ||||||| |
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| T |
37476547 |
ttaataatgtgaactttccactctgggatgacccctcctcgccaataagctccctgcatttttcagctgaa |
37476477 |
T |
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