View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_39 (Length: 363)
Name: NF18453_low_39
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 348
Target Start/End: Complemental strand, 35674746 - 35674408
Alignment:
| Q |
10 |
agcacagagcaaaagggagatgatgctaaagctaccggtgaacttgagctgggagaagaccaacttaccgcaccacccacaaaacgagtgaagactgaca |
109 |
Q |
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| T |
35674746 |
agcacagagcaaaagggagatgatgctaaagctaccggtgaacttgagctgggagaagaccaacttaccgcaccacccacaaaacgagtgaagactgaca |
35674647 |
T |
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| Q |
110 |
agtagagtaaagaagaagaatttccaaccctgtgaaggcatctagtgtttctgcttcgacatacaacatgctggaatttccctttctgtttttgactatg |
209 |
Q |
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| T |
35674646 |
agtagagtaaagaagaagaatttccaaccctgtgaaggcatctagtgtttctgcttcgacatacaacatgctggaatttccctttctgtttttgactttg |
35674547 |
T |
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| Q |
210 |
acttccttaatcagtgatttggtttcacagtatctatttcttgtccttgatttagggtatactttgcattggaaaacttcactccagatattttttgtat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35674546 |
acttccttaatcagtgatttggtttcacagtatctatttcttgtccttaatttagggtatactttgcattggaaaacttcactccagatattttttgtat |
35674447 |
T |
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| Q |
310 |
atttatggaatatttagatggagcttctagaagtattgt |
348 |
Q |
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| T |
35674446 |
atttatggaatgtttggatggagcttctagaagtattgt |
35674408 |
T |
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