View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18453_low_40 (Length: 363)

Name: NF18453_low_40
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18453_low_40
NF18453_low_40
[»] chr8 (24 HSPs)
chr8 (306-363)||(35441058-35441115)
chr8 (306-363)||(5033153-5033210)
chr8 (306-363)||(2581817-2581874)
chr8 (306-363)||(8243477-8243534)
chr8 (306-363)||(22649837-22649894)
chr8 (306-363)||(33841680-33841737)
chr8 (307-363)||(5667187-5667243)
chr8 (307-358)||(5033251-5033302)
chr8 (307-363)||(10086749-10086805)
chr8 (310-358)||(33841588-33841636)
chr8 (307-358)||(5667094-5667145)
chr8 (307-358)||(35440966-35441017)
chr8 (29-91)||(7166969-7167031)
chr8 (307-351)||(10086847-10086891)
chr8 (307-358)||(8796419-8796470)
chr8 (307-362)||(45191217-45191272)
chr8 (215-269)||(14949905-14949959)
chr8 (307-358)||(1880236-1880286)
chr8 (228-282)||(25869256-25869310)
chr8 (308-358)||(39851046-39851096)
chr8 (309-358)||(4958690-4958739)
chr8 (307-352)||(8796512-8796557)
chr8 (307-356)||(43844559-43844608)
chr8 (306-358)||(45191124-45191176)
[»] chr7 (19 HSPs)
chr7 (306-363)||(11016861-11016918)
chr7 (307-363)||(45231940-45231996)
chr7 (306-363)||(34854784-34854841)
chr7 (306-363)||(41018317-41018374)
chr7 (306-363)||(38975797-38975854)
chr7 (307-358)||(4290635-4290686)
chr7 (307-358)||(11016959-11017010)
chr7 (307-358)||(42628385-42628436)
chr7 (306-363)||(4290537-4290594)
chr7 (306-363)||(48000686-48000743)
chr7 (306-358)||(48000826-48000878)
chr7 (308-363)||(15027534-15027589)
chr7 (320-358)||(38975908-38975946)
chr7 (307-358)||(27028725-27028776)
chr7 (328-363)||(29053416-29053451)
chr7 (168-278)||(33894657-33894765)
chr7 (211-302)||(48157093-48157184)
chr7 (208-269)||(3500937-3500998)
chr7 (251-303)||(39505961-39506013)
[»] chr5 (28 HSPs)
chr5 (306-363)||(19655150-19655207)
chr5 (306-363)||(291089-291146)
chr5 (307-358)||(2953280-2953331)
chr5 (307-358)||(16971234-16971285)
chr5 (308-363)||(19598324-19598379)
chr5 (307-358)||(29699457-29699508)
chr5 (307-358)||(3899929-3899980)
chr5 (307-358)||(19655248-19655299)
chr5 (310-358)||(2356364-2356412)
chr5 (307-358)||(291187-291238)
chr5 (307-358)||(2093934-2093985)
chr5 (307-358)||(12913800-12913851)
chr5 (307-358)||(13312261-13312312)
chr5 (307-361)||(12913893-12913947)
chr5 (307-356)||(30117827-30117876)
chr5 (327-363)||(2953199-2953235)
chr5 (306-338)||(29699384-29699416)
chr5 (320-356)||(39777050-39777086)
chr5 (328-363)||(3899840-3899875)
chr5 (208-303)||(10272401-10272496)
chr5 (307-358)||(29385395-29385446)
chr5 (211-269)||(32172692-32172750)
chr5 (308-358)||(32485640-32485690)
chr5 (189-269)||(10907417-10907495)
chr5 (307-356)||(28819007-28819056)
chr5 (306-363)||(30117917-30117974)
chr5 (306-358)||(3180149-3180200)
chr5 (308-356)||(22082997-22083045)
[»] chr4 (28 HSPs)
chr4 (306-363)||(51265437-51265494)
chr4 (307-358)||(30709990-30710041)
chr4 (306-363)||(6271694-6271751)
chr4 (306-363)||(23444358-23444415)
chr4 (307-358)||(35682163-35682214)
chr4 (306-363)||(30861863-30861920)
chr4 (306-358)||(3862635-3862687)
chr4 (306-358)||(3871392-3871444)
chr4 (307-356)||(47661932-47661981)
chr4 (307-358)||(6271792-6271843)
chr4 (307-358)||(42375100-42375151)
chr4 (308-358)||(26186105-26186155)
chr4 (307-356)||(23444268-23444317)
chr4 (307-352)||(35682256-35682301)
chr4 (168-303)||(2996578-2996711)
chr4 (302-337)||(30861800-30861835)
chr4 (307-358)||(51265535-51265586)
chr4 (307-356)||(44380020-44380069)
chr4 (307-352)||(53954700-53954745)
chr4 (327-363)||(42375011-42375047)
chr4 (327-363)||(47404686-47404722)
chr4 (306-338)||(47661859-47661891)
chr4 (307-358)||(2325070-2325121)
chr4 (307-358)||(5048890-5048941)
chr4 (328-363)||(31430560-31430595)
chr4 (211-280)||(6978935-6979004)
chr4 (314-358)||(44379927-44379971)
chr4 (302-338)||(50384182-50384218)
[»] chr3 (21 HSPs)
chr3 (306-363)||(41752956-41753013)
chr3 (307-358)||(30734492-30734543)
chr3 (306-363)||(51046162-51046219)
chr3 (306-358)||(1801443-1801495)
chr3 (306-363)||(43139798-43139855)
chr3 (306-358)||(41753053-41753105)
chr3 (307-363)||(47492137-47492193)
chr3 (308-358)||(55223229-55223279)
chr3 (307-358)||(45103106-45103157)
chr3 (328-363)||(1801597-1801632)
chr3 (307-358)||(18321648-18321699)
chr3 (307-358)||(30734399-30734450)
chr3 (307-358)||(33689173-33689224)
chr3 (307-338)||(47492064-47492095)
chr3 (307-358)||(50524792-50524843)
chr3 (307-349)||(39057047-39057089)
chr3 (308-358)||(39429996-39430046)
chr3 (168-280)||(49465869-49465978)
chr3 (325-358)||(1272557-1272590)
chr3 (208-281)||(36646352-36646425)
chr3 (307-351)||(30580846-30580890)
[»] chr1 (36 HSPs)
chr1 (306-363)||(29179686-29179743)
chr1 (306-363)||(46931989-46932046)
chr1 (307-363)||(37155038-37155094)
chr1 (306-363)||(44706873-44706930)
chr1 (306-363)||(48994006-48994063)
chr1 (306-363)||(5995361-5995418)
chr1 (307-358)||(48993914-48993965)
chr1 (306-358)||(5995458-5995510)
chr1 (308-356)||(15220902-15220950)
chr1 (307-359)||(36290497-36290549)
chr1 (306-358)||(46932071-46932122)
chr1 (312-363)||(48498407-48498458)
chr1 (195-278)||(3597240-3597321)
chr1 (155-282)||(10439712-10439837)
chr1 (307-358)||(1091634-1091685)
chr1 (307-358)||(9157307-9157358)
chr1 (307-358)||(17127561-17127612)
chr1 (307-358)||(17127654-17127705)
chr1 (307-358)||(21630039-21630090)
chr1 (307-358)||(29179594-29179645)
chr1 (307-358)||(29371458-29371509)
chr1 (307-358)||(31342260-31342311)
chr1 (307-358)||(32540838-32540889)
chr1 (307-358)||(49444910-49444961)
chr1 (307-356)||(28395636-28395685)
chr1 (307-348)||(32540755-32540796)
chr1 (307-358)||(12441045-12441096)
chr1 (168-282)||(31517672-31517784)
chr1 (307-358)||(33219663-33219714)
chr1 (307-358)||(36381589-36381640)
chr1 (328-363)||(49445013-49445048)
chr1 (329-363)||(8337954-8337988)
chr1 (208-269)||(6262777-6262838)
chr1 (163-299)||(10199335-10199469)
chr1 (329-358)||(44183438-44183467)
chr1 (328-356)||(29371376-29371404)
[»] chr2 (25 HSPs)
chr2 (306-363)||(16514416-16514473)
chr2 (306-363)||(29508780-29508837)
chr2 (306-357)||(6217222-6217273)
chr2 (306-363)||(9173070-9173127)
chr2 (307-358)||(14470589-14470640)
chr2 (307-358)||(16514514-16514565)
chr2 (307-358)||(32545878-32545929)
chr2 (307-358)||(38933677-38933728)
chr2 (307-353)||(14229355-14229401)
chr2 (321-363)||(37632983-37633025)
chr2 (309-358)||(29508687-29508736)
chr2 (307-358)||(6722041-6722092)
chr2 (319-358)||(32545783-32545822)
chr2 (307-356)||(14892350-14892399)
chr2 (309-358)||(45213892-45213941)
chr2 (307-351)||(33018635-33018679)
chr2 (306-358)||(37961795-37961847)
chr2 (328-363)||(6217326-6217361)
chr2 (307-358)||(39819060-39819111)
chr2 (329-363)||(1992237-1992271)
chr2 (327-361)||(9172984-9173018)
chr2 (29-91)||(14770331-14770393)
chr2 (208-280)||(1742002-1742074)
chr2 (306-338)||(15011297-15011329)
chr2 (315-359)||(30610274-30610317)
[»] scaffold0161 (2 HSPs)
scaffold0161 (306-363)||(27309-27366)
scaffold0161 (307-358)||(27217-27268)
[»] chr6 (13 HSPs)
chr6 (306-363)||(24975744-24975801)
chr6 (306-363)||(551254-551311)
chr6 (307-358)||(24587458-24587509)
chr6 (307-358)||(24618598-24618649)
chr6 (307-349)||(12343190-12343232)
chr6 (308-356)||(13043548-13043596)
chr6 (307-358)||(17750900-17750950)
chr6 (307-358)||(17750992-17751043)
chr6 (232-302)||(9667979-9668049)
chr6 (211-269)||(32577959-32578017)
chr6 (330-363)||(12343101-12343134)
chr6 (318-363)||(13043440-13043485)
chr6 (193-281)||(34538175-34538261)
[»] scaffold0586 (2 HSPs)
scaffold0586 (307-358)||(7137-7187)
scaffold0586 (307-352)||(7050-7095)
[»] scaffold0016 (2 HSPs)
scaffold0016 (307-358)||(49700-49751)
scaffold0016 (328-363)||(49805-49840)
[»] scaffold0047 (1 HSPs)
scaffold0047 (328-363)||(63758-63793)
[»] scaffold0481 (1 HSPs)
scaffold0481 (315-356)||(2974-3015)


Alignment Details
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 35441058 - 35441115
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35441058 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 35441115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 5033210 - 5033153
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  5033210 gcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 5033153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 2581874 - 2581817
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||||||||||||| |||||||||| || |||||||||||||||||||||    
T  2581874 gcattgtgattggccaatgtcaacaatgtcacccaattctatgtcacccaagtatttt 2581817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 8243477 - 8243534
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||    
T  8243477 gcattgtgattgaccaacgtcaccaatgtcacccaactctatgtcacccaagtatttt 8243534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 22649894 - 22649837
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  22649894 gcattgtgattagccaatgtcaccaatgtcactcaactctatgtcacccaagtatttt 22649837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 33841680 - 33841737
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  33841680 gcattctgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 33841737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 307 - 363
Target Start/End: Original strand, 5667187 - 5667243
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  5667187 cattgtaattggccaatgtcaccaatgtcatcaaactctatgtcacccaagtatttt 5667243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 5033251 - 5033302
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  5033251 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 5033302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 10086805 - 10086749
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||| |||||||||| ||||||||| || |||||||||||||||||||||    
T  10086805 cattgtgattgaccaatgtcactaatgtcacccaattctatgtcacccaagtatttt 10086749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 33841636 - 33841588
Alignment:
Q  310 tgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  33841636 tgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 33841588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 5667145 - 5667094
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||| |||||||||||||||||| | |||||||||||||||||||    
T  5667145 cattgtgattgaccaatgtcaccaatgtcatccaactctatgtcacccaagt 5667094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 35441017 - 35440966
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  35441017 cattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 35440966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 7167031 - 7166969
Alignment:
Q  29 gtggaggagtgcacttactcgagctgctgatttctctggttgggatgtccccaattgcaggta 91  Q
    ||||| ||||||||| |||| ||||||| |||| ||||||||||||||| |||||||||||||    
T  7167031 gtggacgagtgcactcactcaagctgctaatttgtctggttgggatgtcaccaattgcaggta 7166969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 10086847 - 10086891
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtca 351  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||    
T  10086847 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 8796470 - 8796419
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||| ||||| |||| ||| |||||||||||||||||||||||||    
T  8796470 cattgtgattgaccaatatcacaaatatcacctaactctatgtcacccaagt 8796419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 45191217 - 45191272
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattt 362  Q
    |||| ||||||| ||||||||||||| ||| | |||||||||||||||||||||||    
T  45191217 cattttgattggtcaatgtcaccaatatcatccaactctatgtcacccaagtattt 45191272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 14949959 - 14949905
Alignment:
Q  215 ggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 269  Q
    |||||||| || ||||||||||||| ||||||||| |||| ||||||||||||||    
T  14949959 ggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttattt 14949905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 1880286 - 1880236
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| ||||||||||| ||||||| || ||||||||||||||||    
T  1880286 cattgtgattggtcaatgtcaccagtgtcacc-aattctatgtcacccaagt 1880236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 25869256 - 25869310
Alignment:
Q  228 aaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctcc 282  Q
    |||||||||||| ||||||||| || | ||||||||||||||  |||||||||||    
T  25869256 aaataacttatgacatgtccataagttgttttcagcttatttccataaactctcc 25869310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 39851046 - 39851096
Alignment:
Q  308 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||| ||||||||||||||||||  |||| ||||||| ||||||    
T  39851046 attgtgattggtcaatgtcaccaatgtcactcaactttatgtcatccaagt 39851096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 4958690 - 4958739
Alignment:
Q  309 ttgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||| ||||||||| ||| ||| ||||||||||||||| |||||    
T  4958690 ttgtgattggtcaatgtcactaatatcatctaactctatgtcacgcaagt 4958739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 8796512 - 8796557
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 352  Q
    |||| ||||||| ||||||||||||| ||||||| |||||||||||    
T  8796512 cattttgattggtcaatgtcaccaatatcacctagctctatgtcac 8796557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 43844559 - 43844608
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 356  Q
    |||||||||||  |||| |||||||||||| | |||||||||||||||||    
T  43844559 cattgtgattgatcaatatcaccaatgtcatccaactctatgtcacccaa 43844608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 45191176 - 45191124
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||   ||||||||||||| ||| | |||||||||||||||||||    
T  45191176 gcattgtgattaatcaatgtcaccaatatcatccaactctatgtcacccaagt 45191124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 11016918 - 11016861
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11016918 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 11016861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 307 - 363
Target Start/End: Original strand, 45231940 - 45231996
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45231940 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 45231996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 34854784 - 34854841
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  34854784 gcattgtgattgaccaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 34854841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 41018317 - 41018374
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  41018317 gcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 41018374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 38975854 - 38975797
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||    
T  38975854 gcattgtgattgaccaatgttaccaatgtcacccaactctatgtcacccaagtatttt 38975797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 4290635 - 4290686
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  4290635 cattgtgattggccaatgtcaccaatgtcacccaactgtatgtcacccaagt 4290686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 11016959 - 11017010
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  11016959 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 11017010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 42628385 - 42628436
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  42628385 cattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaagt 42628436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 4290594 - 4290537
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||    
T  4290594 gcattgtgattgaccaatatcaccaatatcacccaactctatgtcacccaagtatttt 4290537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 48000743 - 48000686
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||    
T  48000743 gcattgtgattgatcaatgtcaccaatgtcacccaactcaatgtcacccaagtatttt 48000686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 48000826 - 48000878
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  48000826 gcattgtgattggtcaatgtcaccaatgtcacccaactctatgtgacccaagt 48000878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 15027589 - 15027534
Alignment:
Q  308 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||| |||||||||||||||||   |||||||||| |||||||||||||    
T  15027589 attgtgattggtcaatgtcaccaatgtcaaacaactctatgttacccaagtatttt 15027534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 38975908 - 38975946
Alignment:
Q  320 caatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  38975908 caatgtcaccaatgtcacctaactctatgtcacctaagt 38975946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 27028776 - 27028725
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||| |||||||||||||||||||  |||| ||||||||| ||||    
T  27028776 cattgtgattgtccaatgtcaccaatgtcactcaactatatgtcaccaaagt 27028725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 29053416 - 29053451
Alignment:
Q  328 ccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||| ||||||||||||||||||||||||    
T  29053416 ccaatgtcacccaactctatgtcacccaagtatttt 29053451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 278
Target Start/End: Complemental strand, 33894765 - 33894657
Alignment:
Q  168 ttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttat 267  Q
    ||||||||||||||  |  ||||| |||||||||||||  || |||| ||||||| || |||| | | |||| ||||||||| || | ||||||||||||    
T  33894765 ttatttgagcttatcaaatgacataagcacttgtgaga--ctgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttat 33894668  T
Q  268 ttaaataaact 278  Q
    || ||||||||    
T  33894667 ttcaataaact 33894657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 48157093 - 48157184
Alignment:
Q  211 tttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctcccaaatggtttatgaaaacaa 302  Q
    |||||||||||| ||  ||| |||||||| ||||||||| |||| ||||||||||||||  ||||  |||||| ||| | || |||||||||    
T  48157093 tttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatttccataagatctcccgaatagcttgtgaaaacaa 48157184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 3500937 - 3500998
Alignment:
Q  208 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 269  Q
    ||||||| ||||||| ||  |||||||||||| ||||| ||| |||| ||||||||||||||    
T  3500937 ctatttgtgagagcttatggaaataacttatgacatgtacatcagctgttttcagcttattt 3500998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 39506013 - 39505961
Alignment:
Q  251 agctattttcagcttatttaaataaactctcccaaatggtttatgaaaacaac 303  Q
    |||||||||||||||||||  |||||||||||  ||| | |||||||||||||    
T  39506013 agctattttcagcttatttccataaactctccagaatagcttatgaaaacaac 39505961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 19655207 - 19655150
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19655207 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 19655150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 291146 - 291089
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  291146 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcactcaagtatttt 291089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 2953280 - 2953331
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2953280 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 2953331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 16971234 - 16971285
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  16971234 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 16971285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 19598379 - 19598324
Alignment:
Q  308 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  19598379 attgtgattgaccaatgtcaccaatgttacccaactctatgtcacccaagtatttt 19598324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 29699457 - 29699508
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  29699457 cattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagt 29699508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 3899929 - 3899980
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  3899929 cattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 3899980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 19655248 - 19655299
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  19655248 cattgtgattggacaatgtcaccaatgtcactcaactctatgtcacccaagt 19655299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 2356364 - 2356412
Alignment:
Q  310 tgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||||||||||||||||| | ||||||||||||| |||||    
T  2356364 tgtgattggccaatgtcaccaatgtcatccaactctatgtcacacaagt 2356412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 291187 - 291238
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||||||||    
T  291187 cattgtgattgatcaatgtcaccaatgtcacccaactctatatcacccaagt 291238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 2093985 - 2093934
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||  ||||||||||||| ||||| |||||||||||||||||||    
T  2093985 cattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 2093934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 12913851 - 12913800
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||||||||||||||||||||||  |||| |||||||| |||||    
T  12913851 cattgtgattggccaatgtcaccaatgtcactcaactatatgtcacacaagt 12913800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 13312312 - 13312261
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||| ||||    
T  13312312 cattgtgattgatcaatgtcatcaatgtcacctaactctatgtcacctaagt 13312261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 12913893 - 12913947
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatt 361  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||| ||| ||||    
T  12913893 cattgtgattgaccaatatcaccaatgtcacccaactctatgtcacacaaatatt 12913947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 30117876 - 30117827
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 356  Q
    |||||||||||| |||| |||||||||||||| |||||||| ||||||||    
T  30117876 cattgtgattggtcaatatcaccaatgtcacccaactctatatcacccaa 30117827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 2953235 - 2953199
Alignment:
Q  327 accaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||| ||||||||||||||||||||||||    
T  2953235 accaatgtcacccaactctatgtcacccaagtatttt 2953199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 29699416 - 29699384
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacc 338  Q
    |||||||||||||||||||||||||||||||||    
T  29699416 gcattgtgattggccaatgtcaccaatgtcacc 29699384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 39777086 - 39777050
Alignment:
Q  320 caatgtcaccaatgtcacctaactctatgtcacccaa 356  Q
    ||||||||||||||||||| |||||||||||||||||    
T  39777086 caatgtcaccaatgtcacccaactctatgtcacccaa 39777050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 3899875 - 3899840
Alignment:
Q  328 ccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3899875 ccaatgtcacccaactctatgtcacccaagtatttt 3899840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 10272401 - 10272496
Alignment:
Q  208 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctcccaaatggtttatgaaaacaac 303  Q
    ||||||||||| ||| ||  ||| |||||||| ||||||  | || | ||||||||||||||  ||||||||||| | |||| |||||||||||||    
T  10272401 ctatttgggagtgcttatagaaacaacttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttatgaaaacaac 10272496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 29385395 - 29385446
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||| |||||||||||||||||||||||| | | | |||||||||||||    
T  29385395 cattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 29385446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 32172750 - 32172692
Alignment:
Q  211 tttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 269  Q
    |||||||||||| ||  ||| |||||||| ||||||||| ||| |||||||||||||||    
T  32172750 tttgggagagcttatggaaacaacttatgacatgtccataagccattttcagcttattt 32172692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 32485640 - 32485690
Alignment:
Q  308 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||  ||||||||||||||||||| |||||| |||||| |||||    
T  32485640 attgtgattgatcaatgtcaccaatgtcacccaactctgtgtcacacaagt 32485690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 10907495 - 10907417
Alignment:
Q  189 catgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 269  Q
    ||||| |||||||||||  || ||||| |||||| || |||| ||||||||||||||| || |||| ||||| ||||||||    
T  10907495 catgaacacttgtgaga--ctgtttggaagagcttatgaaaacaacttatgtcatgtcaataagctgttttcggcttattt 10907417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 28819007 - 28819056
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 356  Q
    |||| |||||| |||||||||||||| ||||  |||||||||||||||||    
T  28819007 cattatgattgaccaatgtcaccaatatcactcaactctatgtcacccaa 28819056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 30117917 - 30117974
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||| |||||| ||||| |||||||||||| | |||||||||||| |||| ||||||    
T  30117917 gcattatgattgaccaatatcaccaatgtcatccaactctatgtcatccaaatatttt 30117974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 3180149 - 3180200
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| |||||||||||||||| ||| |||||||||| || |||||    
T  3180149 gcattgtgattgaccaatgtcaccaatgttacc-aactctatgtgacacaagt 3180200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 22083045 - 22082997
Alignment:
Q  308 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 356  Q
    ||||||||||| ||||||||  ||||||||  |||||||||||||||||    
T  22083045 attgtgattggtcaatgtcattaatgtcacacaactctatgtcacccaa 22082997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 51265494 - 51265437
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  51265494 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 51265437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 30709990 - 30710041
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30709990 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 30710041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 6271751 - 6271694
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  6271751 gcattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagtatttt 6271694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 23444358 - 23444415
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  23444358 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaaatatttt 23444415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 35682214 - 35682163
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35682214 cattgtgattggccaatgtcaccaatatcacctaactctatgtcacccaagt 35682163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 30861863 - 30861920
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||    
T  30861863 gcattgtgattggccaatgtcaccaatatcatccaactctatgtcacccaagtatttt 30861920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 3862635 - 3862687
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  3862635 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacctaagt 3862687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 3871392 - 3871444
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  3871392 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacctaagt 3871444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 47661932 - 47661981
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 356  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  47661932 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaa 47661981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 6271792 - 6271843
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||||||||||||||||| ||||  |||||||||||||||||||    
T  6271792 cattgtgattggccaatgtcaccaatatcactcaactctatgtcacccaagt 6271843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 42375100 - 42375151
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  42375100 cattgtgattgatcaatgtcaccaatgtcacccaactctatgtcacccaagt 42375151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 26186105 - 26186155
Alignment:
Q  308 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  26186105 attgtgattggccaatgtcatcaatgttacccaactctatgtcacccaagt 26186155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 23444317 - 23444268
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 356  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  23444317 cattgtgattggtcaatgtcaccaatgtcacccaactctatgttacccaa 23444268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 35682256 - 35682301
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 352  Q
    ||||||||| || |||||||||||||||||||||||||||||||||    
T  35682256 cattgtgatcggtcaatgtcaccaatgtcacctaactctatgtcac 35682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 303
Target Start/End: Complemental strand, 2996711 - 2996578
Alignment:
Q  168 ttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttat 267  Q
    |||||||| |||||| || ||||| ||||||| |||||  || |||| ||||||| || |||| |||||||| ||||||||| |||| |||||| |||||    
T  2996711 ttatttgaacttatttattgacataagcacttttgaga--ctgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttat 2996614  T
Q  268 ttaaataaactctcccaaatggtttatgaaaacaac 303  Q
    ||  |||  |||||| | || | |||||||||||||    
T  2996613 tttcatacgctctccaagatagcttatgaaaacaac 2996578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 337
Target Start/End: Complemental strand, 30861835 - 30861800
Alignment:
Q  302 acaagcattgtgattggccaatgtcaccaatgtcac 337  Q
    ||||||||||||||||||||||||||||||||||||    
T  30861835 acaagcattgtgattggccaatgtcaccaatgtcac 30861800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 51265535 - 51265586
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||| ||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  51265535 cattatgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 51265586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 44380020 - 44380069
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 356  Q
    |||||||||||| |||| |||||||||||||  |||||||||||||||||    
T  44380020 cattgtgattggtcaatatcaccaatgtcactcaactctatgtcacccaa 44380069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 53954700 - 53954745
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 352  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||    
T  53954700 cattgtaattggacaatgtcaccaatgtcacccaactctatgtcac 53954745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 42375047 - 42375011
Alignment:
Q  327 accaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||| ||||||||||||||||||||||||    
T  42375047 accaatgtcacccaactctatgtcacccaagtatttt 42375011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 47404686 - 47404722
Alignment:
Q  327 accaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||| ||||||||||||||||||||||||    
T  47404686 accaatgtcacccaactctatgtcacccaagtatttt 47404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 47661891 - 47661859
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacc 338  Q
    |||||||||||||||||||||||||||||||||    
T  47661891 gcattgtgattggccaatgtcaccaatgtcacc 47661859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 2325070 - 2325121
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||| | |||||||| |||||||||| ||||||||||||| |||||    
T  2325070 cattgtgatttgtcaatgtcatcaatgtcaccaaactctatgtcactcaagt 2325121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 5048890 - 5048941
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||| |||||| ||||||||| |||||||||| |||||||||||| ||||||    
T  5048890 cattatgattgaccaatgtcatcaatgtcacccaactctatgtcatccaagt 5048941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 31430560 - 31430595
Alignment:
Q  328 ccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31430560 ccaatgtcacccaactctatgtcacccaagtatttt 31430595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 6978935 - 6979004
Alignment:
Q  211 tttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactct 280  Q
    ||||| ||| || ||| |||||||||||| |||||| || |||| ||||||||||||||  |||||||||    
T  6978935 tttggcagaacttattgaaataacttatgacatgtctataagctgttttcagcttattttcataaactct 6979004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 44379971 - 44379927
Alignment:
Q  314 attggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||| ||||||||||  |||||||||||| ||||||    
T  44379971 attggccaatgtcgccaatgtcactcaactctatgtcatccaagt 44379927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 50384182 - 50384218
Alignment:
Q  302 acaagcattgtgattggccaatgtcaccaatgtcacc 338  Q
    |||||||||||||||| | ||||||||||||||||||    
T  50384182 acaagcattgtgattgacgaatgtcaccaatgtcacc 50384218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 41753013 - 41752956
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41753013 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 41752956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 30734492 - 30734543
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30734492 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 30734543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 51046162 - 51046219
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  51046162 gcattgtgattggccaatgtcaccaatgtcatccaactctatgtcacccaagtatttt 51046219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 1801495 - 1801443
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1801495 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 1801443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 43139798 - 43139855
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  43139798 gcattgttattggccaatgtcaccaatgtcacccaactctatgtcacccaaatatttt 43139855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 41753053 - 41753105
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  41753053 gcattgtgattggccaatgtcaccaatgtcactcaactctatgtcacccaagt 41753105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 307 - 363
Target Start/End: Original strand, 47492137 - 47492193
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||    
T  47492137 cattgtgattggccaatatgaccaatgtcacccaactctatgtcacccaactatttt 47492193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 55223279 - 55223229
Alignment:
Q  308 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||| ||||| |||||||||||||||||||||||||||| |||||    
T  55223279 attgtgattgaccaatatcaccaatgtcacctaactctatgtcacacaagt 55223229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 45103157 - 45103106
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||  |||| |||||||||||||| |||||||||||||||||||    
T  45103157 cattgtgattgatcaatatcaccaatgtcacccaactctatgtcacccaagt 45103106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 1801597 - 1801632
Alignment:
Q  328 ccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1801597 ccaatgtcacccaactctatgtcacccaagtatttt 1801632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 18321699 - 18321648
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||  |||||||    
T  18321699 cattgtgattgaccaatgtcaccaatatcacccaactctatgttgcccaagt 18321648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 30734450 - 30734399
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||| || |||||||| |||||||||| ||||||||||||| |||||    
T  30734450 cattgtgatcggtcaatgtcatcaatgtcaccaaactctatgtcacacaagt 30734399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 33689224 - 33689173
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||| ||||| ||| |||||||||| ||||||||||||| |||||    
T  33689224 cattgtgattgaccaatatcatcaatgtcacccaactctatgtcacacaagt 33689173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 338
Target Start/End: Complemental strand, 47492095 - 47492064
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacc 338  Q
    ||||||||||||||||||||||||||||||||    
T  47492095 cattgtgattggccaatgtcaccaatgtcacc 47492064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 50524792 - 50524843
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||| | ||| |||||||||||||  |||||||||||||||||||    
T  50524792 cattgtgattgactaatatcaccaatgtcactcaactctatgtcacccaagt 50524843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 39057047 - 39057089
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgt 349  Q
    |||||| |||| || ||||||||||||||||||||||||||||    
T  39057047 cattgtcattgtccgatgtcaccaatgtcacctaactctatgt 39057089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 39429996 - 39430046
Alignment:
Q  308 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||| |||||||||||||| ||||||||| |||| |||||||| |||||    
T  39429996 attgtgcttggccaatgtcactaatgtcacccaactttatgtcactcaagt 39430046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 49465869 - 49465978
Alignment:
Q  168 ttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttat 267  Q
    |||||||||||||| |||   ||| | ||||||||||||    |||| ||||||| ||  ||| |||||||| ||||||||||| ||||||||| |||||    
T  49465869 ttatttgagcttatccattagcataaacacttgtgagagt---tttgtgagagcttatagaaacaacttatgacatgtccatgaactattttcaacttat 49465965  T
Q  268 ttaaataaactct 280  Q
    ||  |||||||||    
T  49465966 ttccataaactct 49465978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 1272557 - 1272590
Alignment:
Q  325 tcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||||| |||||||||||||||||||    
T  1272557 tcaccaatgtcacccaactctatgtcacccaagt 1272590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 36646352 - 36646425
Alignment:
Q  208 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctc 281  Q
    ||||||||||||||| ||  |||  ||||||| ||||||||| |||| |||||| |||||||  ||||||||||    
T  36646352 ctatttgggagagcttatggaaaccacttatggcatgtccataagctgttttcatcttatttctataaactctc 36646425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 30580846 - 30580890
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtca 351  Q
    ||||||||||| |||||||||| ||||||||| || |||||||||    
T  30580846 cattgtgattgaccaatgtcacaaatgtcacccaattctatgtca 30580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 29179686 - 29179743
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29179686 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 29179743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 46932046 - 46931989
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46932046 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 46931989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 37155094 - 37155038
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37155094 cattgtgattggccaatgtcaccaatgtcaccaaactctatgtcacccaagtatttt 37155038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 44706873 - 44706930
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  44706873 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaaatatttt 44706930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 48994006 - 48994063
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  48994006 gcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 48994063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 5995418 - 5995361
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||    
T  5995418 gcattgtgattggccaatgttaccaatgtcatcaaactctatgtcacccaagtatttt 5995361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 48993965 - 48993914
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  48993965 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 48993914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 5995458 - 5995510
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||||||||    
T  5995458 gcattgtgattggtcaatgtcaccaatgtcatccaactctatgtcacccaagt 5995510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 15220902 - 15220950
Alignment:
Q  308 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 356  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||    
T  15220902 attgtgattggccaatatcaccaatgtcacccaactctatgtcacccaa 15220950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 36290497 - 36290549
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagta 359  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  36290497 cattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaagta 36290549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 46932071 - 46932122
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  46932071 gcattgtgattggtcaatgtcaccaatgtcacc-aactctatgtcacccaagt 46932122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 48498458 - 48498407
Alignment:
Q  312 tgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  48498458 tgattgaccaatgtcacaaatgtcacccaactctatgtcacccaagtatttt 48498407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 3597240 - 3597321
Alignment:
Q  195 cacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaact 278  Q
    |||||||||||  || ||||| |||| |||| ||||||||||||| |||| |||| |||||||||||||||||||  |||||||    
T  3597240 cacttgtgaga--ctgtttggaagagttgataaaaataacttatgacatggccataagctattttcagcttatttccataaact 3597321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 282
Target Start/End: Complemental strand, 10439837 - 10439712
Alignment:
Q  155 tgtttgagttgagttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagct 254  Q
    ||||||| |||| ||||||||||||||| || | ||| ||  |||||||||  ||||||||||||||| || |||| ||  |||| ||||||||| | ||    
T  10439837 tgtttgaattgacttatttgagcttatttatggccataagatcttgtgaga--ctatttgggagagcttatgaaaacaaactatgacatgtccataatct 10439740  T
Q  255 attttcagcttatttaaataaactctcc 282  Q
      |||||||||||||  |||||||||||    
T  10439739 gctttcagcttatttccataaactctcc 10439712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 1091634 - 1091685
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| ||| ||||||||| ||||| |||||||||||||||||||    
T  1091634 cattgtgattggtcaaagtcaccaatatcacccaactctatgtcacccaagt 1091685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 9157358 - 9157307
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| |||||| |||||||||||| ||||||||||||| |||||    
T  9157358 cattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 9157307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 17127612 - 17127561
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| ||||||||| |||||||||||||||||| |||| |||||    
T  17127612 cattgtgattggtcaatgtcactaatgtcacctaactctatatcacacaagt 17127561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 17127654 - 17127705
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||| ||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  17127654 cattttgattggtcaatgtcactaatgtcacctaactctatatcacccaagt 17127705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 21630090 - 21630039
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| ||||||||||||||||||| |||| |||||||| |||||    
T  21630090 cattgtgattggtcaatgtcaccaatgtcacccaactttatgtcacgcaagt 21630039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 29179645 - 29179594
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| || |||||||||||||||| |||||||||||| ||||||    
T  29179645 cattgtgattggtcagtgtcaccaatgtcacccaactctatgtcatccaagt 29179594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 29371458 - 29371509
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| |||| |||||||||||||||| ||||||||||| |||||    
T  29371458 cattgtgattggtcaatatcaccaatgtcacctagctctatgtcacacaagt 29371509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 31342311 - 31342260
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||||||||||| |  ||||||| |||||||||||||||||||    
T  31342311 cattgtgattggccaatgtcatcggtgtcacccaactctatgtcacccaagt 31342260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 32540838 - 32540889
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| ||||||||||||||||| | || ||||||||||||||||    
T  32540838 cattgtgattggtcaatgtcaccaatgtcatccaattctatgtcacccaagt 32540889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 49444961 - 49444910
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  49444961 cattgtgattgatcgatgtcaccaatgtcacccaactctatgtcacccaagt 49444910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 28395685 - 28395636
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 356  Q
    |||||||||||| ||||||||||||||||||  |||||||||| ||||||    
T  28395685 cattgtgattggtcaatgtcaccaatgtcactcaactctatgttacccaa 28395636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 32540796 - 32540755
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatg 348  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  32540796 cattgtgattggccaatgccaccaatgtcacccaactctatg 32540755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 12441045 - 12441096
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||| ||||||| ||||||||||||| || ||||||||| ||||||    
T  12441045 cattgtgattagccaatgccaccaatgtcaccaaattctatgtcatccaagt 12441096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 31517672 - 31517784
Alignment:
Q  168 ttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttat 267  Q
    ||||||||||||||| |  | ||| |||||||||||||  || ||||||||| || || |||| |||| ||| ||||| ||| |||| ||||||||||||    
T  31517672 ttatttgagcttatttactggcataagcacttgtgaga--ctgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttat 31517769  T
Q  268 ttaaataaactctcc 282  Q
    ||  |||| ||||||    
T  31517770 tttcataagctctcc 31517784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 33219663 - 33219714
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||  ||||||||||||||||| | |||||||||| ||||||||    
T  33219663 cattgtgattgatcaatgtcaccaatgtcatccaactctatgttacccaagt 33219714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 36381640 - 36381589
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||||||||||||||||| ||| | || ||||||||| ||||||    
T  36381640 cattgtgattggccaatgtcaccaatatcatcgaattctatgtcatccaagt 36381589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 49445013 - 49445048
Alignment:
Q  328 ccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||| ||||||||||||||||||||||||    
T  49445013 ccaatgtcacccaactctatgtcacccaagtatttt 49445048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 363
Target Start/End: Original strand, 8337954 - 8337988
Alignment:
Q  329 caatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||| ||||||||||||||||||||||||    
T  8337954 caatgtcacccaactctatgtcacccaagtatttt 8337988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 6262838 - 6262777
Alignment:
Q  208 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 269  Q
    ||||||||||||||| || |||||||||||||  |||||||| || | |||| |||||||||    
T  6262838 ctatttgggagagcttatgaaaataacttatgatatgtccataagttgttttaagcttattt 6262777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 10199335 - 10199469
Alignment:
Q  163 ttgagttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcag 262  Q
    |||| ||||||||||||||  |   |||| ||||||||||| |  |||||||||||| || || |||||| |||||| ||||| ||| || | |||||||    
T  10199335 ttgacttatttgagcttatctactaacataagcacttgtgaca--ctatttgggagaactcatgaaaatagcttatgacatgttcataagttgttttcag 10199432  T
Q  263 cttatttaaataaactctcccaaatggtttatgaaaa 299  Q
    |||||||  |||| |||||  |||| | |||||||||    
T  10199433 cttattttcataagctctctaaaatagcttatgaaaa 10199469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 358
Target Start/End: Original strand, 44183438 - 44183467
Alignment:
Q  329 caatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||||||||||||||||||||    
T  44183438 caatgtcacctaactctatgtcacccaagt 44183467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 356
Target Start/End: Complemental strand, 29371404 - 29371376
Alignment:
Q  328 ccaatgtcacctaactctatgtcacccaa 356  Q
    |||||||||||||||||||||||||||||    
T  29371404 ccaatgtcacctaactctatgtcacccaa 29371376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 16514473 - 16514416
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16514473 gcatagtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 16514416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 29508780 - 29508837
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  29508780 gcattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagtatttt 29508837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 6217273 - 6217222
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaag 357  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6217273 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaag 6217222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 9173070 - 9173127
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||    
T  9173070 gcattgtgattggccaatatcaccaatgtcacccaactctatgtcacctaaatatttt 9173127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 14470640 - 14470589
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||| |||||    
T  14470640 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacacaagt 14470589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 16514514 - 16514565
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  16514514 cattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaagt 16514565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 32545878 - 32545929
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||||||||    
T  32545878 cattatgattggccaatgtcaccaatgtcactaaactctatgtcacccaagt 32545929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 38933677 - 38933728
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  38933677 cattatgattggccaacgtcaccaatgtcacccaactctatgtcacccaagt 38933728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 14229401 - 14229355
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacc 353  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  14229401 cattgtgattgaccaatgtcaccaatgtcaccgaactctatgtcacc 14229355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 37633025 - 37632983
Alignment:
Q  321 aatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  37633025 aatgtcaccaatgtcaccaaactctatgtcacccaagtatttt 37632983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 29508736 - 29508687
Alignment:
Q  309 ttgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||| ||||||||||||||||||| |||||||||||||| ||||    
T  29508736 ttgtgattggtcaatgtcaccaatgtcacccaactctatgtcacctaagt 29508687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 6722041 - 6722092
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||||||| |||| ||||||| | |||||||||||||||||||    
T  6722041 cattgtgattggccaatatcactaatgtcaaccaactctatgtcacccaagt 6722092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 32545822 - 32545783
Alignment:
Q  319 ccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  32545822 ccaatgtcaccaatgtcacctaactctatgtcacctaagt 32545783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 14892350 - 14892399
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 356  Q
    |||||||||||  ||||||||||||||||| | |||||||||||||||||    
T  14892350 cattgtgattgatcaatgtcaccaatgtcatccaactctatgtcacccaa 14892399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 45213892 - 45213941
Alignment:
Q  309 ttgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||| |||||||| |||||||||| ||||||||||||| |||||    
T  45213892 ttgtgattggtcaatgtcatcaatgtcacccaactctatgtcacacaagt 45213941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 33018635 - 33018679
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtca 351  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||    
T  33018635 cattgtgattgaccaatatcaccaatgtcacccaactctatgtca 33018679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 37961795 - 37961847
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||| ||||||||| ||| ||||  |||||||||||||||||||    
T  37961795 gcattgtgattggtcaatgtcacaaatatcactcaactctatgtcacccaagt 37961847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 6217326 - 6217361
Alignment:
Q  328 ccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||| ||||||||||||||||||||||||    
T  6217326 ccaatgtcacccaactctatgtcacccaagtatttt 6217361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 39819111 - 39819060
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||| |||||||||||||||||||||||| | | | |||||||||||||    
T  39819111 cattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 39819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 1992271 - 1992237
Alignment:
Q  329 caatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||| |||||||||||    
T  1992271 caatgtcacctaactctatgtcatccaagtatttt 1992237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 9173018 - 9172984
Alignment:
Q  327 accaatgtcacctaactctatgtcacccaagtatt 361  Q
    |||||||||||| ||||||||||||||||||||||    
T  9173018 accaatgtcacccaactctatgtcacccaagtatt 9172984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 14770393 - 14770331
Alignment:
Q  29 gtggaggagtgcacttactcgagctgctgatttctctggttgggatgtccccaattgcaggta 91  Q
    |||||||| ||||||||| | ||||||  |||| |||||||||||||||  ||||||||||||    
T  14770393 gtggaggaatgcacttaccctagctgcaaatttatctggttgggatgtcaacaattgcaggta 14770331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 1742002 - 1742074
Alignment:
Q  208 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactct 280  Q
    ||||||||||||||| ||  ||| |||||||| ||||| ||| |||||| |||| |||||||  |||||||||    
T  1742002 ctatttgggagagcttatggaaacaacttatgacatgtgcataagctatcttcaacttatttccataaactct 1742074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 15011329 - 15011297
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacc 338  Q
    |||||||||||||||||| ||||||||||||||    
T  15011329 gcattgtgattggccaatatcaccaatgtcacc 15011297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 30610274 - 30610317
Alignment:
Q  315 ttggccaatgtcaccaatgtcacctaactctatgtcacccaagta 359  Q
    ||||||||||||||||||| |||| || |||||||||||||||||    
T  30610274 ttggccaatgtcaccaatgccacc-aattctatgtcacccaagta 30610317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 27309 - 27366
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  27309 gcattgtgattggccaatatcaccaatgtcacccaactctatatcacccaagtatttt 27366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 27268 - 27217
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  27268 cattgtgattggccaatatcactaatgtcacccaactctatgtcacccaagt 27217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 24975801 - 24975744
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  24975801 gcattgtgattgaccaatgtcaccaatgtcagccaactctatgtcacccaagtatttt 24975744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 551254 - 551311
Alignment:
Q  306 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||||||||||||||||||| ||| | || |||||||||||||| ||||||    
T  551254 gcattgtgattggccaatgtcaccaatatcatccaattctatgtcacccaaatatttt 551311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 24587509 - 24587458
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||| ||||    
T  24587509 cattgtgattgaccaatgtcactaatgtcacccaactctatgtcacctaagt 24587458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 24618649 - 24618598
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||| |||||    
T  24618649 cattgtgattgatcaatgtcaccaatgtcacccaactctatgtcactcaagt 24618598  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 12343190 - 12343232
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgt 349  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  12343190 cattgtgattggccaatgtcaccaatctcacccaactctatgt 12343232  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 13043548 - 13043596
Alignment:
Q  308 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 356  Q
    ||||||||| ||||||||||||||| ||||  |||||||||||||||||    
T  13043548 attgtgattagccaatgtcaccaatatcactcaactctatgtcacccaa 13043596  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 17750950 - 17750900
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||| |||||    
T  17750950 cattgtgattgaccaatgtcaccaatgtcatc-aactctatgtcacacaagt 17750900  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 17750992 - 17751043
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    ||||||||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  17750992 cattgtgatcggccaatgtcatcaatatcacccaactctatgtcacacaagt 17751043  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 9667979 - 9668049
Alignment:
Q  232 aacttatgtcatgtccatgagctattttcagcttatttaaataaactctcccaaatggtttatgaaaacaa 302  Q
    |||||||| ||||||||| |||| |||||| |||||||  |||| |||||| |||  ||||||||||||||    
T  9667979 aacttatgacatgtccataagctgttttcaacttatttccataagctctccgaaacagtttatgaaaacaa 9668049  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 32577959 - 32578017
Alignment:
Q  211 tttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 269  Q
    |||| ||||||| || |||| |||||||| ||||||| |||||| ||||||||||||||    
T  32577959 tttgagagagcttatgaaaacaacttatgacatgtccttgagctgttttcagcttattt 32578017  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 363
Target Start/End: Complemental strand, 12343134 - 12343101
Alignment:
Q  330 aatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||| ||||||||||||||||||||||||    
T  12343134 aatgtcacccaactctatgtcacccaagtatttt 12343101  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 13043485 - 13043440
Alignment:
Q  318 gccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  13043485 gccaatatcaccaatgtcacccaattctatgtcacccaaatatttt 13043440  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 281
Target Start/End: Original strand, 34538175 - 34538261
Alignment:
Q  193 agcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctc 281  Q
    |||||||||||||  ||||||| |||| || || |||| | |||| | ||||||||| | |||||||||||||||||| | ||||||||    
T  34538175 agcacttgtgaga--ctatttgagagatcttataaaaacagcttacgacatgtccataaactattttcagcttatttatacaaactctc 34538261  T

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Target: scaffold0586 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 7137 - 7187
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  7137 cattgtgattggccaatgtcaccaatgtcacc-aactctatgtcacacaagt 7187  T

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Target: scaffold0586; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 7095 - 7050
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 352  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||    
T  7095 cattgtgattggctaatatcaccaatgtcacccaactctatgtcac 7050  T

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Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 49751 - 49700
Alignment:
Q  307 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 358  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||||||||    
T  49751 cattgtgattggtcaatgtcatcaatgtcacccaactctatgtcacccaagt 49700  T

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Target: scaffold0016; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 49805 - 49840
Alignment:
Q  328 ccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    |||||||||||||||||||||||||| |||||||||    
T  49805 ccaatgtcacctaactctatgtcaccgaagtatttt 49840  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 63793 - 63758
Alignment:
Q  328 ccaatgtcacctaactctatgtcacccaagtatttt 363  Q
    ||||||||||| ||||||||||||||||||||||||    
T  63793 ccaatgtcacccaactctatgtcacccaagtatttt 63758  T

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Target: scaffold0481 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 2974 - 3015
Alignment:
Q  315 ttggccaatgtcaccaatgtcacctaactctatgtcacccaa 356  Q
    ||||||||||||||| |||||||| |||||||||||| ||||    
T  2974 ttggccaatgtcaccgatgtcacccaactctatgtcagccaa 3015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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