View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_41 (Length: 362)
Name: NF18453_low_41
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 39488311 - 39487999
Alignment:
| Q |
1 |
taagaggaatgttgacttatgatgtcatcgtgagagctatacatgacgtagttgctgaactaactaattagcaatctcacttcaagaatatagtgtgccc |
100 |
Q |
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| T |
39488311 |
taagaggaatgttgacttatgatgtcatcgtgagagctatacatgacgtagttgctgaactaactaattagcaatctctcttcaagaatatagtgtgccc |
39488212 |
T |
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| Q |
101 |
atgaaacatccgtgaattgctttatttgtagttgcctaaacattttttataaataaataaatataaatgttgctgaggttgcaatttaaattttacaact |
200 |
Q |
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| T |
39488211 |
atgaaacatccgtgaattgctttatttgtagttgcctaaacattttttataaataaataaatataaatgttgctgaggttgcaatttaaattttacaact |
39488112 |
T |
|
| Q |
201 |
ttag--gactggccagtaaatttgttaaaatcgtctatctttaaaatgtcatgatcatgaacacaacttattgcaaaacaacatgtattctt---ataat |
295 |
Q |
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| T |
39488111 |
ttaggagactggccagtaaatttgttaaaatcgtctgtctttaaaatgtcatgatcatgaacacaacttattgcaaaacaacatgtattcttataataat |
39488012 |
T |
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| Q |
296 |
ggcatgatcataa |
308 |
Q |
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| T |
39488011 |
ggcatgatcataa |
39487999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 39480730 - 39480646
Alignment:
| Q |
157 |
ataaatataaatgttgctgaggttgcaatttaaattttacaactttag--gactggccagtaaatttgttaaaatcgtctatctt |
239 |
Q |
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| T |
39480730 |
ataaatataaatgttgctaaggtagcaatttaaattttacaagtttaggagaccggccagtaaatttcttaaaatcatctatctt |
39480646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 39480829 - 39480777
Alignment:
| Q |
96 |
tgcccatgaaacatccgtgaattgctttatttgtagttgcctaaacatttttt |
148 |
Q |
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| T |
39480829 |
tgcccatgaaacatccgtgaattgctttatctatagttgcctaaacatttttt |
39480777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 39479889 - 39479828
Alignment:
| Q |
245 |
tgtcatgatcatgaacacaacttattgcaaaacaacatgtattc-ttataatggcatgatcataa |
308 |
Q |
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| T |
39479889 |
tgtcatgatcatgaacacggcttattgcaa---aacatgtattctttaaaatggcatgatcataa |
39479828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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