View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18453_low_47 (Length: 326)
Name: NF18453_low_47
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 5378485 - 5378181
Alignment:
| Q |
1 |
cattacctttatctattgttgtagatttatgacaaattttgagcaaaccctttgagtaagtgtcaatatgacatttatatgtaaagaaaagacaattcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5378485 |
cattacctttatctattgttgtagatttatgacaaattttaagcaaaccctttgagtaagtgtcaatatgacatttatatgtaaagaacagacaattcca |
5378386 |
T |
|
| Q |
101 |
cttggaagaaaactatcatccataaagaattctttactccaaaaacttaaattatagaagaattcatgcaccaaaatacattttatttctaaaattaatt |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5378385 |
cttggaagaaaactgtcatccataaagaattctttactccaaaaacttaaattatagaagaattcatgcaccaaaatacattttatttctagaattaatt |
5378286 |
T |
|
| Q |
201 |
attaacataacatgtgaaaaataagatggattaatatcaacgacatcaatgcttagttaagtattaacattagcagatgaattctttcaacaaaaacatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5378285 |
attaacataacatgtgaaaaataagatgaattaat----acgacatcaatgcttagttaagtattaacatcagcagatgaattctttcaacaaaaacatt |
5378190 |
T |
|
| Q |
301 |
agcagatga |
309 |
Q |
| |
|
||||||||| |
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|
| T |
5378189 |
agcagatga |
5378181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 19001325 - 19001017
Alignment:
| Q |
1 |
cattacctttatctattgttgtagatttatgacaaattttgagcaaaccctttgagtaagtgtcaatatgacatttatatgtaaagaaaagacaattcca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
19001325 |
cattacctttatctattgtcgtagatttatgacaaattttgagcaaaccctttgagtaagtgtcaatatgacatttatatgtaaagaacaaacaattcca |
19001226 |
T |
|
| Q |
101 |
cttggaagaaaactatcatccataaagaattctttactccaaaaacttaaattatagaagaattcatgcaccaaaatacattttatttctaaaattaatt |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
19001225 |
cttggaaggaaactatcatccataaagaattctttactccaaaaacataaattatagaagaattcatgcaacaaaatacattttatttctagaattaatt |
19001126 |
T |
|
| Q |
201 |
attaacataacatgtgaaaaataagatggattaatatcaacgacatcaatgcttagttaagtattaacattagcagatgaattctttcaacaaaaacatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19001125 |
attaacataacatgtgaaaaataagatgaattaatatcagcgagatcaatgcttagttaagtattaacattaggagatgaattctttcaacaaaaacatt |
19001026 |
T |
|
| Q |
301 |
agcagatga |
309 |
Q |
| |
|
|||| |||| |
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|
| T |
19001025 |
agcaaatga |
19001017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 22324726 - 22324423
Alignment:
| Q |
1 |
cattacctttatctattgttgtagatttatgacaaattttgagcaaaccctttgagtaagtgtcaatatgacatttatatgtaaagaaaagacaattcca |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
22324726 |
cattgcctttatctattgttgtagatttatgtcaaattttgagcaaaccctttgagcaagtgtcaatatgacatttatatgtaaagaacagacaattcca |
22324627 |
T |
|
| Q |
101 |
cttggaagaaaactatcatccataaagaattctttactccaaaaacttaaattatagaagaattcatgcaccaaaatacattttatttctaaaattaatt |
200 |
Q |
| |
|
|||||||| ||| |||||||||||||||| | |||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
22324626 |
cttggaagtaaagtatcatccataaagaagtttttactccaataacttattttat---agaattcatgcaccaaaatacattttatttctagacttaatt |
22324530 |
T |
|
| Q |
201 |
attaacataacatgtgaaaaataagatggattaatatcaacgacatcaatgcttagttaagtattaacattagcagatgaattctttcaaca----aaaa |
296 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||||| || |||||||||||||| |||||||| |||||||||||||||||||| | |||| |
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|
| T |
22324529 |
attaacgtaaaatgtgaaaaataagattaattaatat------cagcaatgcttagttaaatattaacaatagcagatgaattctttcaaaaaaacaaaa |
22324436 |
T |
|
| Q |
297 |
cattagcagatga |
309 |
Q |
| |
|
||||||||||||| |
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|
| T |
22324435 |
cattagcagatga |
22324423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 22679978 - 22679872
Alignment:
| Q |
1 |
cattacctttatctattgttgtagatttatgacaaattttgagcaaaccctttgagtaagtgtcaatatgacatttatatgtaaagaaaagacaattcca |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
22679978 |
cattgcctttatctattgttgtagatttatgtcaaattttgagaaaaccctttgagcaagtgtcaatatgacatttatatgtaaagaacagacaattcca |
22679879 |
T |
|
| Q |
101 |
cttggaa |
107 |
Q |
| |
|
||||||| |
|
|
| T |
22679878 |
cttggaa |
22679872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 23219940 - 23219650
Alignment:
| Q |
1 |
cattacctttatctattgttgtagatttatgacaaattttgagcaaaccctttgagtaagtgtcaatatgacatttatatgtaaagaaaagacaattcca |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||||| |
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|
| T |
23219940 |
cattgcctttatctattgttgt-gatttatgtcaaattttgagcaaaccctttgagcaagtgtcaatatgatatttatatgtaaagaacatacaattcca |
23219842 |
T |
|
| Q |
101 |
cttggaagaaaactatcatccataaagaattctttactccaaaaacttaaattatagaagaattcatgcaccaaaatacattttatttctaaaattaat- |
199 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| | ||||| |
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|
| T |
23219841 |
cttgaaagtaaagtatcatccataaagaattctttactccaataacttgttttatagaagaattcatgcaccaaaatacattttatttctagacttaatt |
23219742 |
T |
|
| Q |
200 |
-tattaacataacatgtgaaaaataagatggattaatatcaacgacatcaatgcttagttaagtattaacattagcagatgaattctttcaacaaaaa |
296 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| |||||||||| ||||| |
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|
| T |
23219741 |
atattaacgtaacatgtgaaaaataagatgagttaatatcaa------caatgcttagttaaatattaacattagcagatggattctttcaaaaaaaa |
23219650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 22644738 - 22644844
Alignment:
| Q |
1 |
cattacctttatctattgttgtagatttatgacaaattttgagcaaaccctttgagtaagtgtcaatatgacatttatatgtaaagaaaagacaattcca |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22644738 |
cattgcctttatctattgttgtagatttatgtcaaattttgagaaaaccctttgagcaagtgtcaatatgacatttatatgtaaagaacagacaattcca |
22644837 |
T |
|
| Q |
101 |
cttggaa |
107 |
Q |
| |
|
||||||| |
|
|
| T |
22644838 |
cttggaa |
22644844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 27031715 - 27031609
Alignment:
| Q |
1 |
cattacctttatctattgttgtagatttatgacaaattttgagcaaaccctttgagtaagtgtcaatatgacatttatatgtaaagaaaagacaattcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
27031715 |
cattacctttatctattgttgtagatttatgtcaaattttgagaaaactctttgagcaagtgtcaatatgacaattatatataaagaacagacaattcca |
27031616 |
T |
|
| Q |
101 |
cttggaa |
107 |
Q |
| |
|
||||||| |
|
|
| T |
27031615 |
cttggaa |
27031609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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