View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18453_low_48 (Length: 323)

Name: NF18453_low_48
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18453_low_48
NF18453_low_48
[»] chr1 (6 HSPs)
chr1 (105-203)||(7277270-7277368)
chr1 (19-60)||(4203280-4203321)
chr1 (103-146)||(4203322-4203365)
chr1 (124-183)||(24361088-24361147)
chr1 (168-203)||(7277196-7277231)
chr1 (168-197)||(4203351-4203380)
[»] chr3 (5 HSPs)
chr3 (108-183)||(421507-421582)
chr3 (124-180)||(404511-404567)
chr3 (137-184)||(6455955-6456004)
chr3 (137-184)||(6760843-6760892)
chr3 (198-235)||(6456004-6456041)
[»] chr6 (1 HSPs)
chr6 (124-183)||(24181015-24181074)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 7277368 - 7277270
Alignment:
Q  105 tagaatcggtcatcgcgcctcagtttatcttccttccgcagcttattttccacccatcatttctcttccttccgcagccatttagaatcaattagccac 203  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  7277368 tagaatcggtcatcgcgcttcaggttatcttcctttcgcagcttattttccacccaccgtttctcttccttccgcagccatttagaatcaatcagccac 7277270  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 4203280 - 4203321
Alignment:
Q  19 aattatatatccggaaaacgacaacctcgtacattaaatatt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4203280 aattatatatccggaaaacgacaacctcgtacattaaatatt 4203321  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 4203322 - 4203365
Alignment:
Q  103 tttagaatcggtcatcgcgcctcagtttatcttccttccgcagc 146  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  4203322 tttagaatcggtcatcgcgcttcagtttatcttccttccgcagc 4203365  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 24361147 - 24361088
Alignment:
Q  124 tcagtttatcttccttccgcagcttattttccacccatcatttctcttccttccgcagcc 183  Q
    ||||||| |||| | |||||||||||||||||| ||| | ||||||||||||||||||||    
T  24361147 tcagtttctctttcctccgcagcttattttccagccaccgtttctcttccttccgcagcc 24361088  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 7277231 - 7277196
Alignment:
Q  168 tcttccttccgcagccatttagaatcaattagccac 203  Q
    ||||||||||||||||||||||||||||| ||||||    
T  7277231 tcttccttccgcagccatttagaatcaatcagccac 7277196  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 4203351 - 4203380
Alignment:
Q  168 tcttccttccgcagccatttagaatcaatt 197  Q
    ||||||||||||||||||||||||||||||    
T  4203351 tcttccttccgcagccatttagaatcaatt 4203380  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 421582 - 421507
Alignment:
Q  108 aatcggtcatcgcgcctcagtttatcttccttccgcagcttattttccacccatcatttctcttccttccgcagcc 183  Q
    |||| |||||||| | ||||||| |||| | |||||||||||||||||| ||| | ||||||||||||||||||||    
T  421582 aatcagtcatcgcacttcagtttctctttcctccgcagcttattttccagccaccgtttctcttccttccgcagcc 421507  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 404511 - 404567
Alignment:
Q  124 tcagtttatcttccttccgcagcttattttccacccatcatttctcttccttccgca 180  Q
    ||||||| |||| | |||||||||||||||||| ||| | |||||||||||||||||    
T  404511 tcagtttctctttcctccgcagcttattttccagccaccgtttctcttccttccgca 404567  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 6455955 - 6456004
Alignment:
Q  137 cttccgcagcttattttcca--cccatcatttctcttccttccgcagcca 184  Q
    ||||||||||||||||||||  |||| |||||||||||||||||| ||||    
T  6455955 cttccgcagcttattttccaaacccaccatttctcttccttccgctgcca 6456004  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 6760892 - 6760843
Alignment:
Q  137 cttccgcagcttattttcca--cccatcatttctcttccttccgcagcca 184  Q
    ||||||||||||||||||||  |||| |||||||||||||||||| ||||    
T  6760892 cttccgcagcttattttccaaacccaccatttctcttccttccgctgcca 6760843  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 6456004 - 6456041
Alignment:
Q  198 agccaccgtgccggaactatagctccatattcgtgttc 235  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  6456004 agccaccgtgccggaattatagctccatatttgtgttc 6456041  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 24181015 - 24181074
Alignment:
Q  124 tcagtttatcttccttccgcagcttattttccacccatcatttctcttccttccgcagcc 183  Q
    ||||||| |||| | |||||||||||||||||| ||| | ||||||||||||||||||||    
T  24181015 tcagtttctctttcctccgcagcttattttccagccaccgtttctcttccttccgcagcc 24181074  T

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