View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18453_low_5 (Length: 745)

Name: NF18453_low_5
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18453_low_5
NF18453_low_5
[»] chr4 (1 HSPs)
chr4 (51-730)||(35918695-35919355)


Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 51 - 730
Target Start/End: Original strand, 35918695 - 35919355
Alignment:
Q  51 ctcatgggtaaggctactaaatccctaactttaggcctatctacnnnnnnntacttttcattaaaaagatctcttaacaaaaaaggtcatattaaatctt 150  Q
    ||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35918695 ctcatgggtaaggctactaaatccctaactttaggcctacctacaaaaaaatacttttcattaaaaagatctcttaacaaaaaaggtcatattaaatctt 35918794  T
Q  151 gctttaaacctcgcaaaattattgaggcggacatgtcgagcgtgttaaaggctaaatgacgatcataaaccagaaaattgcggttttcaaaatcatttac 250  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  35918795 gctttaaacctcgcaaaattattgagccggacatgtcgagcgtgttaaaggctaaaggacgatcataaaccagaaaattgtggttttcaaaatcatttac 35918894  T
Q  251 agagtgnnnnnnntggtgcaatttatggaaagtcgtgatcttagattcaaaatcaggcgatggaaatatcaagtttcaatggagnnnnnnntgagaacag 350  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||            ||| |||||    
T  35918895 agagtgaaaaaaatggtgcaatttatggaaagtcgtgatcttagattcaaaatcaggcgattgaaatatcaagtttcaa------------tgacaacag 35918982  T
Q  351 aaaccaaatcacaacaatgaataatagtaatt----atgaatgacattattacatttttatggtaaagaaaagaaacgtaaccttttgattttgatttgc 446  Q
    | |||||||||||| |||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35918983 agaccaaatcacaagaatgaataatagtaattatgaatgaatgacattattacatttttatggtaaagaaaagaaacgtaaccttttgattttgatttgc 35919082  T
Q  447 agtcgaagggtttatgttttggttgcggaaggaggaagattgattgaagaagttttttcacgctgtgttgtgttgtgttgcgttgccctgatatgacaaa 546  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||    
T  35919083 agtagaagggtttatgttttggttgcggaaggaggaagattgattgaagaagttttttcacgctgtgttgt----------gttgccctgatatgacaaa 35919172  T
Q  547 ttctcggtatttattaggtttgtaataagggtacctactattatattaaaagtcacgagtg----ttattctattagtttaagggtatagtatagtaccc 642  Q
    ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  35919173 ttctcggtatttattaggtttgtaataagggtacctac-----tattaaaagtcacgagtgttatttattctattagtttaagggtatagtatagtaccc 35919267  T
Q  643 ttttgatttctcatgtgcgccgacttgagacccaagaaataagggtgttctagaaggtctgcccccactagctagcaatgcaaagaac 730  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35919268 ttttgatttctcatgtgcgccgacttgagacccaagaaataagggtgttctagaaggtctgcccccactagctatcaatgcaaagaac 35919355  T

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