View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18453_low_52 (Length: 285)

Name: NF18453_low_52
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18453_low_52
NF18453_low_52
[»] chr2 (33 HSPs)
chr2 (18-77)||(44237887-44237946)
chr2 (115-163)||(43065447-43065495)
chr2 (222-271)||(43065444-43065493)
chr2 (172-228)||(10143117-10143173)
chr2 (44-163)||(38078336-38078455)
chr2 (115-173)||(10567072-10567130)
chr2 (115-161)||(25796197-25796243)
chr2 (115-163)||(1939329-1939377)
chr2 (224-272)||(5781695-5781743)
chr2 (115-163)||(34652033-34652081)
chr2 (115-199)||(1647223-1647309)
chr2 (217-272)||(2226989-2227044)
chr2 (216-271)||(34652024-34652079)
chr2 (44-163)||(35329744-35329863)
chr2 (116-163)||(40434979-40435026)
chr2 (218-272)||(10285886-10285940)
chr2 (172-210)||(25790089-25790127)
chr2 (218-272)||(25796190-25796244)
chr2 (115-149)||(30538170-30538204)
chr2 (216-270)||(32821837-32821891)
chr2 (114-168)||(38767365-38767419)
chr2 (115-173)||(41817183-41817241)
chr2 (201-271)||(44238007-44238077)
chr2 (115-149)||(44606107-44606141)
chr2 (222-271)||(1939326-1939375)
chr2 (114-163)||(16867764-16867813)
chr2 (115-168)||(28677656-28677709)
chr2 (115-160)||(32821837-32821882)
chr2 (44-160)||(8820218-8820334)
chr2 (217-261)||(11344759-11344803)
chr2 (172-228)||(17952770-17952826)
chr2 (172-228)||(28803575-28803631)
chr2 (115-163)||(29316772-29316820)
[»] chr6 (29 HSPs)
chr6 (78-169)||(2460111-2460202)
chr6 (116-163)||(27909636-27909683)
chr6 (115-169)||(7785741-7785795)
chr6 (78-197)||(9833071-9833191)
chr6 (115-160)||(6536975-6537020)
chr6 (72-169)||(8420151-8420248)
chr6 (115-160)||(9027606-9027651)
chr6 (44-132)||(4325231-4325319)
chr6 (115-163)||(4420668-4420716)
chr6 (115-228)||(30004848-30004963)
chr6 (115-163)||(34939769-34939817)
chr6 (78-161)||(281808-281891)
chr6 (115-162)||(9667982-9668029)
chr6 (217-271)||(9667974-9668028)
chr6 (115-169)||(10616538-10616592)
chr6 (115-160)||(2034443-2034488)
chr6 (115-160)||(2167155-2167200)
chr6 (115-160)||(2178788-2178833)
chr6 (217-270)||(9027606-9027659)
chr6 (128-169)||(20512654-20512695)
chr6 (115-160)||(30863274-30863319)
chr6 (117-158)||(31583709-31583750)
chr6 (78-163)||(32386523-32386608)
chr6 (128-169)||(34404108-34404149)
chr6 (224-268)||(283125-283169)
chr6 (115-163)||(3528828-3528876)
chr6 (117-169)||(4246429-4246481)
chr6 (114-158)||(29296291-29296335)
chr6 (72-132)||(32917253-32917313)
[»] chr4 (28 HSPs)
chr4 (78-169)||(27123312-27123403)
chr4 (116-161)||(46415790-46415835)
chr4 (222-272)||(11264327-11264377)
chr4 (122-163)||(5131254-5131295)
chr4 (115-160)||(23819117-23819162)
chr4 (120-168)||(9843255-9843303)
chr4 (112-164)||(34398679-34398731)
chr4 (172-222)||(927427-927477)
chr4 (115-161)||(1137739-1137785)
chr4 (44-106)||(7367980-7368042)
chr4 (117-163)||(7694009-7694055)
chr4 (115-169)||(19304945-19304999)
chr4 (115-161)||(29467621-29467667)
chr4 (222-271)||(6987735-6987784)
chr4 (122-163)||(17884093-17884134)
chr4 (172-229)||(30024644-30024701)
chr4 (122-163)||(53673662-53673703)
chr4 (171-228)||(54327517-54327574)
chr4 (172-213)||(55870410-55870451)
chr4 (129-169)||(2592320-2592360)
chr4 (77-149)||(4691887-4691959)
chr4 (217-257)||(6978951-6978991)
chr4 (114-150)||(8469373-8469409)
chr4 (224-272)||(29467620-29467668)
chr4 (115-163)||(43824308-43824356)
chr4 (115-163)||(46401290-46401337)
chr4 (77-149)||(48719350-48719422)
chr4 (172-212)||(54325106-54325146)
[»] chr8 (20 HSPs)
chr8 (216-273)||(4055604-4055661)
chr8 (115-169)||(11795111-11795165)
chr8 (115-169)||(25869263-25869317)
chr8 (44-160)||(6950350-6950466)
chr8 (72-173)||(21130629-21130728)
chr8 (114-163)||(5088877-5088926)
chr8 (72-149)||(11569411-11569488)
chr8 (116-169)||(28769337-28769390)
chr8 (72-160)||(14949894-14949982)
chr8 (218-270)||(14949894-14949946)
chr8 (224-271)||(11795119-11795166)
chr8 (115-158)||(13000421-13000464)
chr8 (217-271)||(25869255-25869309)
chr8 (115-161)||(41606900-41606946)
chr8 (172-213)||(30013178-30013219)
chr8 (115-144)||(38421308-38421337)
chr8 (115-163)||(11183570-11183618)
chr8 (115-163)||(20672775-20672823)
chr8 (127-163)||(30918138-30918174)
chr8 (216-268)||(43704364-43704416)
[»] chr1 (42 HSPs)
chr1 (44-161)||(10199334-10199451)
chr1 (76-213)||(47877082-47877222)
chr1 (115-169)||(27140497-27140551)
chr1 (115-169)||(27963367-27963421)
chr1 (117-163)||(30371173-30371219)
chr1 (114-169)||(16981932-16981987)
chr1 (115-173)||(6292508-6292566)
chr1 (115-169)||(12477284-12477338)
chr1 (51-169)||(32515374-32515492)
chr1 (172-225)||(15360842-15360895)
chr1 (78-151)||(49692012-49692085)
chr1 (114-158)||(4549260-4549304)
chr1 (115-163)||(26184773-26184821)
chr1 (115-163)||(28689449-28689497)
chr1 (115-163)||(35017601-35017649)
chr1 (122-161)||(6659541-6659580)
chr1 (122-161)||(28077073-28077112)
chr1 (114-173)||(30257698-30257757)
chr1 (115-158)||(34380475-34380518)
chr1 (117-160)||(44031998-44032041)
chr1 (80-171)||(44815265-44815356)
chr1 (172-226)||(4622040-4622094)
chr1 (115-173)||(27887115-27887173)
chr1 (114-160)||(28935872-28935918)
chr1 (115-163)||(4549538-4549587)
chr1 (217-266)||(6231805-6231854)
chr1 (120-161)||(6279426-6279467)
chr1 (121-158)||(6659710-6659747)
chr1 (121-158)||(39347970-39348007)
chr1 (72-169)||(40485727-40485824)
chr1 (114-174)||(6981506-6981566)
chr1 (114-158)||(7761607-7761651)
chr1 (188-228)||(11129190-11129230)
chr1 (114-170)||(11695879-11695935)
chr1 (115-163)||(12564496-12564544)
chr1 (115-155)||(15579515-15579555)
chr1 (114-158)||(29007712-29007756)
chr1 (215-271)||(30371175-30371231)
chr1 (176-228)||(33527220-33527272)
chr1 (114-146)||(37659910-37659942)
chr1 (115-163)||(46252679-46252727)
chr1 (172-228)||(49517015-49517071)
[»] chr3 (32 HSPs)
chr3 (114-228)||(49586932-49587041)
chr3 (115-169)||(54180777-54180831)
chr3 (115-163)||(37825147-37825195)
chr3 (115-171)||(43115073-43115129)
chr3 (72-163)||(37273159-37273250)
chr3 (80-158)||(11039301-11039379)
chr3 (120-162)||(21862177-21862219)
chr3 (114-163)||(13709819-13709868)
chr3 (115-160)||(36200124-36200169)
chr3 (115-160)||(45432936-45432981)
chr3 (72-156)||(1810009-1810093)
chr3 (128-168)||(5292530-5292570)
chr3 (72-156)||(20210882-20210966)
chr3 (216-272)||(31010428-31010484)
chr3 (115-162)||(20192603-20192650)
chr3 (115-161)||(41724238-41724285)
chr3 (115-161)||(3015840-3015886)
chr3 (115-149)||(12923322-12923356)
chr3 (71-161)||(30923852-30923941)
chr3 (115-161)||(31010429-31010475)
chr3 (217-271)||(43115083-43115137)
chr3 (172-213)||(8007764-8007805)
chr3 (128-169)||(13371136-13371177)
chr3 (123-164)||(23785279-23785320)
chr3 (44-169)||(24281066-24281191)
chr3 (224-257)||(24624251-24624284)
chr3 (128-173)||(27792887-27792932)
chr3 (128-169)||(49546494-49546535)
chr3 (117-169)||(41633379-41633431)
chr3 (72-151)||(42530293-42530376)
chr3 (116-144)||(42817220-42817248)
chr3 (217-273)||(53848052-53848108)
[»] chr7 (29 HSPs)
chr7 (114-163)||(9423590-9423639)
chr7 (116-155)||(33894660-33894699)
chr7 (78-156)||(39345503-39345581)
chr7 (115-169)||(46082055-46082109)
chr7 (118-163)||(24363601-24363646)
chr7 (115-164)||(32329093-32329142)
chr7 (44-163)||(7244705-7244825)
chr7 (216-272)||(12234877-12234933)
chr7 (115-163)||(35267387-35267435)
chr7 (72-144)||(36537952-36538024)
chr7 (115-159)||(39360052-39360096)
chr7 (114-158)||(44151476-44151520)
chr7 (80-163)||(36598318-36598401)
chr7 (218-257)||(44808199-44808238)
chr7 (115-169)||(6263361-6263414)
chr7 (115-161)||(12234886-12234932)
chr7 (78-156)||(28727723-28727801)
chr7 (115-160)||(4966184-4966229)
chr7 (224-257)||(12834958-12834991)
chr7 (114-159)||(39334222-39334267)
chr7 (175-228)||(39591539-39591592)
chr7 (216-257)||(45078319-45078360)
chr7 (176-213)||(45777244-45777281)
chr7 (217-257)||(3500956-3500996)
chr7 (77-161)||(3610699-3610783)
chr7 (117-145)||(6977457-6977485)
chr7 (115-159)||(28521009-28521053)
chr7 (115-163)||(33645958-33646006)
chr7 (217-257)||(39539770-39539810)
[»] chr5 (20 HSPs)
chr5 (114-165)||(19138713-19138764)
chr5 (120-228)||(37968836-37968946)
chr5 (116-158)||(35963271-35963313)
chr5 (72-161)||(6109510-6109599)
chr5 (115-163)||(18543194-18543241)
chr5 (116-168)||(37690634-37690686)
chr5 (115-192)||(8177529-8177604)
chr5 (172-222)||(14295457-14295507)
chr5 (115-161)||(32194076-32194122)
chr5 (114-168)||(32223544-32223597)
chr5 (115-160)||(17369436-17369481)
chr5 (128-169)||(20028500-20028541)
chr5 (80-161)||(28586728-28586809)
chr5 (114-163)||(33533535-33533584)
chr5 (115-155)||(1899187-1899227)
chr5 (115-163)||(14331392-14331440)
chr5 (119-163)||(15074750-15074794)
chr5 (172-224)||(29116999-29117051)
chr5 (172-228)||(35135731-35135787)
chr5 (115-163)||(40205071-40205119)
[»] scaffold0072 (1 HSPs)
scaffold0072 (115-194)||(4951-5032)
[»] scaffold0159 (1 HSPs)
scaffold0159 (224-272)||(27027-27075)
[»] scaffold0020 (1 HSPs)
scaffold0020 (44-160)||(159899-160015)
[»] scaffold0311 (1 HSPs)
scaffold0311 (117-155)||(10616-10654)
[»] scaffold0153 (2 HSPs)
scaffold0153 (116-162)||(6492-6538)
scaffold0153 (116-162)||(13512-13558)
[»] scaffold0147 (1 HSPs)
scaffold0147 (115-161)||(12701-12747)
[»] scaffold0254 (1 HSPs)
scaffold0254 (115-160)||(3501-3546)
[»] scaffold0089 (1 HSPs)
scaffold0089 (128-169)||(33637-33678)
[»] scaffold0044 (1 HSPs)
scaffold0044 (104-140)||(51938-51974)
[»] scaffold0024 (1 HSPs)
scaffold0024 (78-150)||(27614-27686)


Alignment Details
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 44237887 - 44237946
Alignment:
Q  18 aaactgattaataagggcatgcttaaattgacttattttagtttatctacatctataaac 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44237887 aaactgattaataagggcatgcttaaattgacttattttagtttatctacatctataaac 44237946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 43065447 - 43065495
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  43065447 ttatgacatgtccataaattgttttcagcttatttcaataagctctcca 43065495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 43065444 - 43065493
Alignment:
Q  222 aacttatgacatgtccattaactgttttcagcttatatcaataagctctc 271  Q
    |||||||||||||||||| || |||||||||||||| |||||||||||||    
T  43065444 aacttatgacatgtccataaattgttttcagcttatttcaataagctctc 43065493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 10143173 - 10143117
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgtttaagaaataacttat 228  Q
    |||||||||| ||||||||||||||||| || ||||||||||  |||||||||||||    
T  10143173 tagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttat 10143117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 163
Target Start/End: Original strand, 38078336 - 38078455
Alignment:
Q  44 attgacttattttagtttatctacatctataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagc 143  Q
    ||||||||| || ||||||||||| |  |||| |||| |||||||| | ||||||| || ||||||||  || | | ||||| ||||||||||||| |||    
T  38078336 attgacttaattgagtttatctacttaaataagcactggtgagactatctgagagagcttatggaaatagttaaaggcatgttcataagttgttttgagc 38078435  T
Q  144 taatttcaataagctctcca 163  Q
    | ||||  ||||||||||||    
T  38078436 tcatttacataagctctcca 38078455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 10567130 - 10567072
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatagttta 173  Q
    ||||||||||  |||||||||||||||||||||||  | |||||||||| |||||||||    
T  10567130 ttatgacatgatcataagttgttttcagctaattttcacaagctctccagaatagttta 10567072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 25796197 - 25796243
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    |||| |||| |||||||||||||||||||| ||||||||||||||||    
T  25796197 ttattacatatccataagttgttttcagcttatttcaataagctctc 25796243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 1939329 - 1939377
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  1939329 ttatgacatgtccataagctgttttcaacttatttccataagctctcca 1939377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 5781743 - 5781695
Alignment:
Q  224 cttatgacatgtccattaactgttttcagcttatatcaataagctctct 272  Q
    |||||||||||| ||| ||||||||||||||||| || |||||||||||    
T  5781743 cttatgacatgtgcataaactgttttcagcttatttccataagctctct 5781695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 34652033 - 34652081
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  34652033 ttatgacatgtccataagctgttttcaacttatttccataagctctcca 34652081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 1647309 - 1647223
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag--tttagcttatatgaaaacagtttgacttaa 199  Q
    ||||||||||  |||||| ||||||||||| ||||| |||||||||| |||||||  | ||| ||| |  |||||||||||||||||    
T  1647309 ttatgacatgctcataagctgttttcagcttatttccataagctctctataatagcttatagattaaacaaaaacagtttgacttaa 1647223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 2226989 - 2227044
Alignment:
Q  217 gaaataacttatgacatgtccattaactgttttcagcttatatcaataagctctct 272  Q
    |||| |||||||| ||||| ||||| || |||||||||||||| ||||||||||||    
T  2226989 gaaacaacttatggcatgttcattagctattttcagcttatattaataagctctct 2227044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 34652024 - 34652079
Alignment:
Q  216 agaaataacttatgacatgtccattaactgttttcagcttatatcaataagctctc 271  Q
    ||||| |||||||||||||||||| | ||||||||| ||||| || ||||||||||    
T  34652024 agaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctc 34652079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 163
Target Start/End: Original strand, 35329744 - 35329863
Alignment:
Q  44 attgacttattttagtttatctacatctataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagc 143  Q
    |||||||||| | || ||||||||  | ||||||||| |||||| |  ||| |||| || |||||||   || |||||||| || |||||||||| ||||    
T  35329744 attgacttatgtgagcttatctactaccataaacactagtgagattacttgtgagatcttatggaaacagttaatgacatgcccctaagttgtttccagc 35329843  T
Q  144 taatttcaataagctctcca 163  Q
    | ||||| ||||||||||||    
T  35329844 ttatttccataagctctcca 35329863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 40434979 - 40435026
Alignment:
Q  116 tatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||||||||| | |||| || ||||||||||||||||||||    
T  40434979 tatgacatgtccataagctattttaagataatttcaataagctctcca 40435026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 10285940 - 10285886
Alignment:
Q  218 aaataacttatgacatgtccattaactgttttcagcttatatcaataagctctct 272  Q
    |||||||||||||||||||||| | ||||||||| ||||| || ||||| |||||    
T  10285940 aaataacttatgacatgtccataagctgttttcaacttatttccataagttctct 10285886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 25790127 - 25790089
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatctttt 210  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  25790127 tagcttatatgaaaacagtttgacttcactttatctttt 25790089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 25796190 - 25796244
Alignment:
Q  218 aaataacttatgacatgtccattaactgttttcagcttatatcaataagctctct 272  Q
    ||||||||||| |||| ||||| |  |||||||||||||| ||||||||||||||    
T  25796190 aaataacttattacatatccataagttgttttcagcttatttcaataagctctct 25796244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 30538170 - 30538204
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaattt 149  Q
    |||||||||||||||||||||||||||||| ||||    
T  30538170 ttatgacatgtccataagttgttttcagcttattt 30538204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 32821891 - 32821837
Alignment:
Q  216 agaaataacttatgacatgtccattaactgttttcagcttatatcaataagctct 270  Q
    ||||| |||||||||||||||||| | |||||||||| |||| || |||||||||    
T  32821891 agaaacaacttatgacatgtccataagctgttttcagtttatttctataagctct 32821837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 38767365 - 38767419
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctctccataata 168  Q
    |||||||||| |||| |||||||||   ||| |||||||||||||||||||||||    
T  38767365 tttatgacatatccacaagttgtttctcgcttatttcaataagctctccataata 38767419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 41817241 - 41817183
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatagttta 173  Q
    |||||||||||  |||| |||||||||||| ||||| ||||||||||||  ||||||||    
T  41817241 ttatgacatgttgataatttgttttcagcttatttccataagctctccaggatagttta 41817183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 44238007 - 44238077
Alignment:
Q  201 ttgatcttttgtttaagaaataacttatgacatgtccattaactgttttcagcttatatcaataagctctc 271  Q
    |||||||||||||||||||||| ||||||  |||||||| | ||| ||| ||||||| || |||| |||||    
T  44238007 ttgatcttttgtttaagaaatagcttatggaatgtccatgagctggttttagcttatttccataaactctc 44238077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 44606107 - 44606141
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaattt 149  Q
    |||||||||||||||||||||||||||||| ||||    
T  44606107 ttatgacatgtccataagttgttttcagctgattt 44606141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 1939326 - 1939375
Alignment:
Q  222 aacttatgacatgtccattaactgttttcagcttatatcaataagctctc 271  Q
    |||||||||||||||||| | ||||||||| ||||| || ||||||||||    
T  1939326 aacttatgacatgtccataagctgttttcaacttatttccataagctctc 1939375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 16867813 - 16867764
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||| | ||||||||||||||| || ||||| ||||||||||||    
T  16867813 tttatgacatattcataagttgttttcaacttatttccataagctctcca 16867764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 28677656 - 28677709
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataata 168  Q
    ||||||||| | |||||||||||||| ||| ||||| |||||||||||| ||||    
T  28677656 ttatgacattttcataagttgttttcggcttatttccataagctctccaaaata 28677709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 32821882 - 32821837
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    |||||||||||||||||| ||||||||| | ||||| |||||||||    
T  32821882 ttatgacatgtccataagctgttttcagtttatttctataagctct 32821837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 8820218 - 8820334
Alignment:
Q  44 attgacttattttagtttatctacatctataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagc 143  Q
    |||||||||||| ||| |||||||   ||||| |||||  ||||||  || |||||||| |||||||    || |||||||| || ||| ||||||||||    
T  8820218 attgacttatttgagtatatctactaatataagcactttcgagactgcttaagagaccttatggaaacagcttctgacatgttcacaagctgttttcagc 8820317  T
Q  144 taatttcaataagctct 160  Q
    | ||||| |||||||||    
T  8820318 ttatttccataagctct 8820334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 11344759 - 11344803
Alignment:
Q  217 gaaataacttatgacatgtccattaactgttttcagcttatatca 261  Q
    |||| |||||||||||||||||| ||||||||||| ||| |||||    
T  11344759 gaaacaacttatgacatgtccataaactgttttcaacttgtatca 11344803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 17952770 - 17952826
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgtttaagaaataacttat 228  Q
    ||||||||||||||| |||||||||| | || ||||||||||  ||||||| |||||    
T  17952770 tagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttat 17952826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 28803575 - 28803631
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgtttaagaaataacttat 228  Q
    |||||||||||||| ||||||||||| | || ||||||||||   ||||||||||||    
T  28803575 tagcttatatgaaatcagtttgactttattttatcttttgttatcgaaataacttat 28803631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 29316772 - 29316820
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||| |||||||| ||||||||| ||||| ||||| ||||||    
T  29316772 ttatgacatgttcataagttcttttcagcttatttccataagttctcca 29316820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 2460111 - 2460202
Alignment:
Q  78 acttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||||||||| ||||||||| || |||||||    ||||||||||||  ||||||||||||| || ||||| ||||||||||||||||||    
T  2460111 acttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctccataatag 2460202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 27909636 - 27909683
Alignment:
Q  116 tatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  27909636 tatgacatgtccataagttgttttcagcttatttccataagctctcca 27909683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 7785741 - 7785795
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||||||||| ||||||||||||||||| ||||| |||||||||||| |||||    
T  7785741 ttatgacatgtctataagttgttttcagcttatttccataagctctccaaaatag 7785795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 197
Target Start/End: Original strand, 9833071 - 9833191
Alignment:
Q  78 acttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctctccataatagttta--gc 175  Q
    |||| ||||||| ||||||||| || |||||||  | | ||| ||||||||||| || |||||| || ||||| ||||||||| ||| |||| |||  ||    
T  9833071 acttatgagactatttgagagatcttatggaaaaacat-atggcatgtccataaattattttcaacttatttccataagctcttcatgatagcttattgc 9833169  T
Q  176 ttatatgaaaacagtttgactt 197  Q
    ||||| ||||||||||||||||    
T  9833170 ttataagaaaacagtttgactt 9833191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 6537020 - 6536975
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||||    
T  6537020 ttatgacatgttcataagttgttttcagcttatttccataagctct 6536975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 8420151 - 8420248
Alignment:
Q  72 ataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||||||||||||||| || | |||| || || |||||   |||||||||||||| ||| | |||||| || ||||| ||||||||||||| ||||    
T  8420151 ataaacacttgtgagactgttagtgagagcttatagaaatagcttatgacatgtccacaagctattttcaacttatttccataagctctccattatag 8420248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 9027651 - 9027606
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    |||||||||||||||||||||||||||||| ||||  |||||||||    
T  9027651 ttatgacatgtccataagttgttttcagcttattttcataagctct 9027606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 4325231 - 4325319
Alignment:
Q  44 attgacttattttagtttatctacatctataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataag 132  Q
    ||||||| ||||||||||||||||    |||||||||||||||||| |||| || | || | ||||||  ||||| |||||||||||||    
T  4325231 attgactaattttagtttatctactaacataaacacttgtgagactatttgtgacagcttagggaaatagtttatcacatgtccataag 4325319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 4420716 - 4420668
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  4420716 ttatgacatgttcataagctgttttcagcttatttccataagctctcca 4420668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 228
Target Start/End: Complemental strand, 30004963 - 30004848
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag--tttagcttatatgaaaacagtttgacttaacttgatcttttgt 212  Q
    |||||| ||||||||||  ||||||||||| ||||| |||||| || ||| ||||  | ||||||| |||||||| ||||| ||| | || || ||||||    
T  30004963 ttatgaaatgtccataaactgttttcagcttatttccataagcactgcatgatagcatatagcttaaatgaaaactgtttgcctttagtttattttttgt 30004864  T
Q  213 ttaagaaataacttat 228  Q
    |  |||||||||||||    
T  30004863 tatagaaataacttat 30004848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 34939817 - 34939769
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||||||||| |||||||||||| ||||| |||| |||||||    
T  34939817 ttatgacatgtccataaattgttttcagcttatttccataaactctcca 34939769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 281808 - 281891
Alignment:
Q  78 acttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    |||||||||||| |||| |||| || ||||||     |||||||||||| ||||||||||||||||| ||||| || |||||||    
T  281808 acttgtgagactgtttgggagagctaatggaagcaacttatgacatgtctataagttgttttcagcttatttccatgagctctc 281891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 9667982 - 9668029
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcc 162  Q
    |||||||||||||||||| |||||||| || ||||| |||||||||||    
T  9667982 ttatgacatgtccataagctgttttcaacttatttccataagctctcc 9668029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 9667974 - 9668028
Alignment:
Q  217 gaaataacttatgacatgtccattaactgttttcagcttatatcaataagctctc 271  Q
    |||| |||||||||||||||||| | ||||||||| ||||| || ||||||||||    
T  9667974 gaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctc 9668028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 10616538 - 10616592
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    ||||||||||||| |||||||| ||||||| ||||  |||||||||||| |||||    
T  10616538 ttatgacatgtccgtaagttgtgttcagcttatttttataagctctccaaaatag 10616592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 2034443 - 2034488
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    ||||||||| |||||||| ||||||||||| |||||| ||||||||    
T  2034443 ttatgacatttccataagctgttttcagcttatttcattaagctct 2034488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 2167155 - 2167200
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    |||||| ||||||||||||||||||||||| ||||| |||| ||||    
T  2167155 ttatgatatgtccataagttgttttcagcttatttccataatctct 2167200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 2178788 - 2178833
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    |||||| ||||||||||||||||||||||| ||||| |||| ||||    
T  2178788 ttatgatatgtccataagttgttttcagcttatttccataatctct 2178833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 9027659 - 9027606
Alignment:
Q  217 gaaataacttatgacatgtccattaactgttttcagcttatatcaataagctct 270  Q
    ||||||||||||||||||||||| |  |||||||||||||| |  |||||||||    
T  9027659 gaaataacttatgacatgtccataagttgttttcagcttattttcataagctct 9027606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 20512654 - 20512695
Alignment:
Q  128 ataagttgttttcagctaatttcaataagctctccataatag 169  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||    
T  20512654 ataagttgttttcagcttatttccataagctcttcataatag 20512695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 30863319 - 30863274
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    ||||||||||| |||||||||||||||||| | ||| |||||||||    
T  30863319 ttatgacatgtacataagttgttttcagcttacttctataagctct 30863274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 31583750 - 31583709
Alignment:
Q  117 atgacatgtccataagttgttttcagctaatttcaataagct 158  Q
    ||||||||||||||||||||||||| || ||||| |||||||    
T  31583750 atgacatgtccataagttgttttcaacttatttccataagct 31583709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 32386523 - 32386608
Alignment:
Q  78 acttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||||  ||||| ||| || ||||||||   |||| ||||||||| || |||||||||||| ||||  ||||||||||||    
T  32386523 acttgtgagaccgtttgaaagagcttatggaaatatcttataacatgtccacaacttgttttcagcttattttcataagctctcca 32386608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 34404149 - 34404108
Alignment:
Q  128 ataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||||||||||| || ||||| ||||||||||||||||||    
T  34404149 ataagttgttttcaacttatttctataagctctccataatag 34404108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 283169 - 283125
Alignment:
Q  224 cttatgacatgtccattaactgttttcagcttatatcaataagct 268  Q
    |||||||||||||||| |||| |||||||||||| || |||||||    
T  283169 cttatgacatgtccataaactattttcagcttatttctataagct 283125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 3528876 - 3528828
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||||||||| ||||||||| || ||||  ||||||||||||    
T  3528876 ttatgacatgtccataacttgttttcatcttattttcataagctctcca 3528828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 4246481 - 4246429
Alignment:
Q  117 atgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||||||||||||| |||||||| || ||||  ||| ||||||||||||||    
T  4246481 atgacatgtccataagctgttttcaacttatttttatatgctctccataatag 4246429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 29296291 - 29296335
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagct 158  Q
    ||||||||||||||||||||| ||||||||| ||||  |||||||    
T  29296291 tttatgacatgtccataagttattttcagcttattttcataagct 29296335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 32917313 - 32917253
Alignment:
Q  72 ataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataag 132  Q
    |||||||||||||||||| |||| |||| || |||||||    ||||||||||||||||||    
T  32917313 ataaacacttgtgagactgtttgggagagcttatggaaacaacttatgacatgtccataag 32917253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 27123312 - 27123403
Alignment:
Q  78 acttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||||||||| ||||||||| || |||||||    ||||||||||||  ||||||||||||| || ||||| ||||||||||||||||||    
T  27123312 acttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctccataatag 27123403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 46415790 - 46415835
Alignment:
Q  116 tatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    |||||||||||||||||||||||||||||||||| | |||||||||    
T  46415790 tatgacatgtccataagttgttttcagctaattttactaagctctc 46415835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 11264377 - 11264327
Alignment:
Q  222 aacttatgacatgtccattaactgttttcagcttatatcaataagctctct 272  Q
    |||||||||||||||||| ||||||||||| ||||| || |||||||||||    
T  11264377 aacttatgacatgtccataaactgttttcaacttatttccataagctctct 11264327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 5131254 - 5131295
Alignment:
Q  122 atgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||||||||||||||| ||||| ||||||||||||    
T  5131254 atgtccataagttgttttcagcttatttccataagctctcca 5131295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 23819162 - 23819117
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    ||||||||||||||||||||||||||| || ||||| |||||||||    
T  23819162 ttatgacatgtccataagttgttttcatcttatttctataagctct 23819117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 9843255 - 9843303
Alignment:
Q  120 acatgtccataagttgttttcagctaatttcaataagctctccataata 168  Q
    |||| |||||||||||||||||||| ||||||  |||||||||||||||    
T  9843255 acatatccataagttgttttcagcttatttcatcaagctctccataata 9843303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 34398679 - 34398731
Alignment:
Q  112 gctttatgacatgtccataagttgttttcagctaatttcaataagctctccat 164  Q
    ||||||||||||| ||||||||||||||| ||| | ||| |||||||||||||    
T  34398679 gctttatgacatgcccataagttgttttcggcttacttccataagctctccat 34398731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 927477 - 927427
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgtttaagaaata 222  Q
    |||||||||||||||||||||||||| | || ||||||||| | |||||||    
T  927477 tagcttatatgaaaacagtttgactttatttcatcttttgtattagaaata 927427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 1137785 - 1137739
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    ||||||||||| |||||||||||||||| | ||||| ||||||||||    
T  1137785 ttatgacatgttcataagttgttttcagtttatttccataagctctc 1137739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 7367980 - 7368042
Alignment:
Q  44 attgacttattttagtttatctacatctataaacacttgtgagactttttgagagacctcatg 106  Q
    |||||||||||| ||||||||||||   |||||| ||||||||||| |||| |||| ||||||    
T  7367980 attgacttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatg 7368042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 7694009 - 7694055
Alignment:
Q  117 atgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||| |||||||||||||||||| ||||| |||| |||||||    
T  7694009 atgacatgttcataagttgttttcagcttatttccataaactctcca 7694055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 19304999 - 19304945
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    ||||||||||||||||||||||||||||||  |||| || | ||||||| |||||    
T  19304999 ttatgacatgtccataagttgttttcagcttgtttccattaactctccaaaatag 19304945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 29467621 - 29467667
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    |||||||||||||||||| ||||||||||| ||||| |||| |||||    
T  29467621 ttatgacatgtccataagctgttttcagcttatttccataaactctc 29467667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 6987735 - 6987784
Alignment:
Q  222 aacttatgacatgtccattaactgttttcagcttatatcaataagctctc 271  Q
    |||||||||||||||||| |||| |||||| ||||| || ||||||||||    
T  6987735 aacttatgacatgtccataaactattttcaacttatttccataagctctc 6987784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 17884134 - 17884093
Alignment:
Q  122 atgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||| |||||||||||||||||||||||  ||||||||||||    
T  17884134 atgttcataagttgttttcagctaattttcataagctctcca 17884093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 30024701 - 30024644
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgtttaagaaataacttatg 229  Q
    ||||||||||||||||| ||| |||| | || ||||||||||  ||||||||||||||    
T  30024701 tagcttatatgaaaacaattttactttattttatcttttgttatagaaataacttatg 30024644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 53673662 - 53673703
Alignment:
Q  122 atgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||||||||||||||| ||||  ||||||||||||    
T  53673662 atgtccataagttgttttcagcttatttacataagctctcca 53673703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 54327517 - 54327574
Alignment:
Q  171 ttagcttatatgaaaacagtttgacttaacttgatcttttgtttaagaaataacttat 228  Q
    |||||||||||||||||||||||||||   || ||||||||||  ||||| |||||||    
T  54327517 ttagcttatatgaaaacagtttgactttgttttatcttttgttatagaaacaacttat 54327574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 55870410 - 55870451
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgtt 213  Q
    |||||||| ||||||||||||||||| | |||||||||||||    
T  55870410 tagcttatgtgaaaacagtttgactttatttgatcttttgtt 55870451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 2592320 - 2592360
Alignment:
Q  129 taagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||||||||||||| ||||| |||||||||||| |||||    
T  2592320 taagttgttttcagcttatttccataagctctccaaaatag 2592360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 4691959 - 4691887
Alignment:
Q  77 cacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaattt 149  Q
    ||||||||||||| ||||||| | || |||||||    |||||||||| ||||| ||||||||||||| ||||    
T  4691959 cacttgtgagactatttgagaaaacttatggaaacaacttatgacatgcccatatgttgttttcagcttattt 4691887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 6978951 - 6978991
Alignment:
Q  217 gaaataacttatgacatgtccattaactgttttcagcttat 257  Q
    |||||||||||||||||||| || | |||||||||||||||    
T  6978951 gaaataacttatgacatgtctataagctgttttcagcttat 6978991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 8469373 - 8469409
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttc 150  Q
    |||||||||||| |||||||||||||||||| |||||    
T  8469373 tttatgacatgttcataagttgttttcagcttatttc 8469409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 29467620 - 29467668
Alignment:
Q  224 cttatgacatgtccattaactgttttcagcttatatcaataagctctct 272  Q
    |||||||||||||||| | ||||||||||||||| || |||| ||||||    
T  29467620 cttatgacatgtccataagctgttttcagcttatttccataaactctct 29467668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 43824356 - 43824308
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||| ||||| |||||||||||||||||| ||||| ||||||| ||||    
T  43824356 ttatggcatgttcataagttgttttcagcttatttccataagctttcca 43824308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 46401337 - 46401290
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||| |||||||||| ||||||| |||| |||||||||||||    
T  46401337 ttatgacatgttcataagttgtattcagcttattt-aataagctctcca 46401290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 48719350 - 48719422
Alignment:
Q  77 cacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaattt 149  Q
    ||||||||||| | |||||| || || ||| ||||| |||||||||||| | |||| ||||||||||| ||||    
T  48719350 cacttgtgagattgtttgagggaacttatgaaaatggtttatgacatgttcgtaagctgttttcagcttattt 48719422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 54325106 - 54325146
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgt 212  Q
    |||||||||||||||||||||||||| | || |||||||||    
T  54325106 tagcttatatgaaaacagtttgactttattttatcttttgt 54325146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 4055604 - 4055661
Alignment:
Q  216 agaaataacttatgacatgtccattaactgttttcagcttatatcaataagctctctg 273  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||  |||||||||||    
T  4055604 agaaataacttatgacatgtccataaactgttttcagcttatttccttaagctctctg 4055661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 11795165 - 11795111
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||||||||||||||  ||||||||||| ||||| ||||||||||||||||||    
T  11795165 ttatgacatgtccataacctgttttcagcttatttccataagctctccataatag 11795111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 25869263 - 25869317
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||    
T  25869263 ttatgacatgtccataagttgttttcagcttatttccataaactctccatgatag 25869317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 6950466 - 6950350
Alignment:
Q  44 attgacttattttagtttatctacatctataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagc 143  Q
    |||||||||||| |||||||||||    ||||||| |||||||| | |||| |||| || ||| |||     ||||||||||| ||||||||||||||||    
T  6950466 attgacttatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttcagc 6950367  T
Q  144 taatttcaataagctct 160  Q
    | ||||| |||||||||    
T  6950366 ttatttccataagctct 6950350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 21130728 - 21130629
Alignment:
Q  72 ataaacacttgtgagactttttgagagacctcatggaaat-gctttatgacatgtccataagttgttttcagctaatttcaataagctctccataatagt 170  Q
    ||||| |||||||||||| ||||||||| || |||||||| ||||| ||||||||||||  | |||||| |||| ||||| |||||||||| || |||||    
T  21130728 ataaatacttgtgagactgtttgagagagcttatggaaatagcttt-tgacatgtccat--gctgttttgagcttatttccataagctctcaatgatagt 21130632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 5088926 - 5088877
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||| ||||||||||||| |||||||| || ||||||||||||||||||    
T  5088926 tttataacatgtccataagctgttttcaacttatttcaataagctctcca 5088877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 11569411 - 11569488
Alignment:
Q  72 ataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaattt 149  Q
    |||| ||||||||||||| ||| ||||| || |||||||    ||||||||||| |||||||||||||||||| ||||    
T  11569411 ataaccacttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattt 11569488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 28769337 - 28769390
Alignment:
Q  116 tatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    ||||| ||||||||||||||||||||||| ||||| |||| ||||||| |||||    
T  28769337 tatgatatgtccataagttgttttcagcttatttccataaactctccaaaatag 28769390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 14949982 - 14949894
Alignment:
Q  72 ataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    ||||||| |||||||||| |||  |||| || ||| ||||   |||||||||||||||||| ||||||||||| ||||| |||| ||||    
T  14949982 ataaacatttgtgagactgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttatttctataatctct 14949894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 14949946 - 14949894
Alignment:
Q  218 aaataacttatgacatgtccattaactgttttcagcttatatcaataagctct 270  Q
    |||||||||||||||||||||| | ||||||||||||||| || |||| ||||    
T  14949946 aaataacttatgacatgtccataagctgttttcagcttatttctataatctct 14949894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 11795166 - 11795119
Alignment:
Q  224 cttatgacatgtccattaactgttttcagcttatatcaataagctctc 271  Q
    |||||||||||||||| | ||||||||||||||| || ||||||||||    
T  11795166 cttatgacatgtccataacctgttttcagcttatttccataagctctc 11795119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 13000421 - 13000464
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagct 158  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||    
T  13000421 ttatgacatgtccacaagttgttttcagcttatttccataagct 13000464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 25869255 - 25869309
Alignment:
Q  217 gaaataacttatgacatgtccattaactgttttcagcttatatcaataagctctc 271  Q
    ||||||||||||||||||||||| |  |||||||||||||| || |||| |||||    
T  25869255 gaaataacttatgacatgtccataagttgttttcagcttatttccataaactctc 25869309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 41606900 - 41606946
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    ||||||||||| || ||||||||||||||| ||||| ||||||||||    
T  41606900 ttatgacatgttcaaaagttgttttcagcttatttccataagctctc 41606946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 30013219 - 30013178
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgtt 213  Q
    ||||||||||| |||||||||||||||| |||| ||||||||    
T  30013219 tagcttatatggaaacagtttgacttaatttgaccttttgtt 30013178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 38421337 - 38421308
Alignment:
Q  115 ttatgacatgtccataagttgttttcagct 144  Q
    ||||||||||||||||||||||||||||||    
T  38421337 ttatgacatgtccataagttgttttcagct 38421308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 11183618 - 11183570
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||| ||||| ||||| ||||||||||| ||||| ||||||||||||    
T  11183618 ttatgatatgtctataagctgttttcagcttatttccataagctctcca 11183570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 20672823 - 20672775
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||| |||||| ||||||||||| ||||  ||||||||||||    
T  20672823 ttatgacatgttcataagctgttttcagcttattttcataagctctcca 20672775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 30918174 - 30918138
Alignment:
Q  127 cataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  30918174 cataagttgttttcagcttatttccataagctctcca 30918138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 43704364 - 43704416
Alignment:
Q  216 agaaataacttatgacatgtccattaactgttttcagcttatatcaataagct 268  Q
    ||||| |||||||||||||| ||| ||||||||| ||||||| || |||||||    
T  43704364 agaaacaacttatgacatgttcataaactgttttaagcttatttccataagct 43704416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 10199334 - 10199451
Alignment:
Q  44 attgacttattttagtttatctacatctataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagc 143  Q
    |||||||||||| || ||||||||    |||| ||||||||| ||| |||| |||| |||||| ||||   ||||||||||| |||||||||||||||||    
T  10199334 attgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcataagttgttttcagc 10199433  T
Q  144 taatttcaataagctctc 161  Q
    | ||||  ||||||||||    
T  10199434 ttattttcataagctctc 10199451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 213
Target Start/End: Complemental strand, 47877222 - 47877082
Alignment:
Q  76 acacttgtgagactttttgagagacctcatggaaatgc-tttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag--ttt 172  Q
    |||||||||||| |||||||| || |  ||| |||| | |||||||||||  |||||||||||||||||| ||||  ||||||| ||||||||||  | |    
T  47877222 acacttgtgagagtttttgagggagcgtatgaaaatacctttatgacatgctcataagttgttttcagcttattttcataagctttccataatagcttat 47877123  T
Q  173 agcttatatgaaaacagtttgacttaacttgatcttttgtt 213  Q
    || ||||||||||||| ||||| || | || ||||||||||    
T  47877122 agtttatatgaaaacaatttgattttattttatcttttgtt 47877082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 27140551 - 27140497
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||||| ||||    
T  27140551 ttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatag 27140497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 27963367 - 27963421
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    ||||||||||||||||||||||||| |||| ||||  ||||||||||||||||||    
T  27963367 ttatgacatgtccataagttgtttttagcttatttatataagctctccataatag 27963421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 30371219 - 30371173
Alignment:
Q  117 atgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||    
T  30371219 atgacatgtccataagttgttttcagcttatttcaatacgctctcca 30371173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 16981932 - 16981987
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||||||||||||||||||||||| |||| ||||  ||||||||||||| ||||    
T  16981932 tttatgacatgtccataagttgtttttagcttatttatataagctctccatgatag 16981987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 6292566 - 6292508
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatagttta 173  Q
    ||||||||||| |||||| ||||||||||| ||||  |||||||||||| |||||||||    
T  6292566 ttatgacatgttcataagctgttttcagcttattttcataagctctccaaaatagttta 6292508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 12477284 - 12477338
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||||||||||||||||||||||||||| ||||| |||  |||||||| ||||    
T  12477284 ttatgacatgtccataagttgttttcagcttatttccatacactctccatgatag 12477338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 169
Target Start/End: Original strand, 32515374 - 32515492
Alignment:
Q  51 tattttagtttatctacatctataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttc 150  Q
    ||||| |||||||||||    |||| ||||||||||||| |||| |||| || |||||||     ||||||||||| |||||||||||||| || || ||    
T  32515374 tatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatc 32515473  T
Q  151 aataagctctccataatag 169  Q
     ||||||||||||| ||||    
T  32515474 tataagctctccatgatag 32515492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 15360895 - 15360842
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgtttaagaaataact 225  Q
    |||||||||||||||||||||||||| | || ||||||||||  ||||||||||    
T  15360895 tagcttatatgaaaacagtttgactttattttatcttttgttatagaaataact 15360842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 49692012 - 49692085
Alignment:
Q  78 acttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttca 151  Q
    |||||||||||| ||||||||| || ||| ||||   ||||||||||||||||  ||||||||||||| |||||    
T  49692012 acttgtgagactgtttgagagaacttatgaaaatagcttatgacatgtccatagtttgttttcagctattttca 49692085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 4549304 - 4549260
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagct 158  Q
    ||||||||||||| ||||||||||||||||| ||||| |||||||    
T  4549304 tttatgacatgtctataagttgttttcagcttatttccataagct 4549260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 26184821 - 26184773
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||||||||||| ||||||||| | ||||| ||||||||||||    
T  26184821 ttatgacatgtccataagctgttttcagattatttccataagctctcca 26184773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 28689449 - 28689497
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||||||||||||||||||||||| ||||  ||||||| ||||    
T  28689449 ttatgacatgtccataagttgttttcagcttattttcataagctttcca 28689497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 35017649 - 35017601
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||||||||||||| |||||| || ||||| ||||||||||||    
T  35017649 ttatgacatgtccataagttattttcaacttatttccataagctctcca 35017601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 6659580 - 6659541
Alignment:
Q  122 atgtccataagttgttttcagctaatttcaataagctctc 161  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  6659580 atgtccataagttgttttcagcttatttcgataagctctc 6659541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 28077073 - 28077112
Alignment:
Q  122 atgtccataagttgttttcagctaatttcaataagctctc 161  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  28077073 atgttcataagttgttttcagcttatttcaataagctctc 28077112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 30257757 - 30257698
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctctccataatagttta 173  Q
    |||||||||||| |||||| ||||||||||| ||||| |||||| |||||  ||||||||    
T  30257757 tttatgacatgttcataagctgttttcagcttatttctataagccctccaggatagttta 30257698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 34380518 - 34380475
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagct 158  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||    
T  34380518 ttatgacatttccataagctgttttcagcttatttcaataagct 34380475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 44031998 - 44032041
Alignment:
Q  117 atgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    |||||||||||||||| | ||||||||||||||| |||||||||    
T  44031998 atgacatgtccataagctattttcagctaatttccataagctct 44032041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 44815265 - 44815356
Alignment:
Q  80 ttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctctccataatagtt 171  Q
    |||||||||||| ||  ||| ||||||||| |   |||||| ||||  |||| |||||||||||| ||||| |||||||||||| |||||||    
T  44815265 ttgtgagactttgtggaagaactcatggaactagcttatgatatgtgtataaattgttttcagcttatttccataagctctccaaaatagtt 44815356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 4622094 - 4622040
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgtttaagaaataactt 226  Q
    ||||||||||||||| ||||||| || | |||||||||||||  |||||||||||    
T  4622094 tagcttatatgaaaagagtttgaattcatttgatcttttgttatagaaataactt 4622040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 27887115 - 27887173
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatagttta 173  Q
    ||||||||||||||||| ||||||| |||| ||||  ||| ||||||||| ||||||||    
T  27887115 ttatgacatgtccataaattgtttttagcttatttttatatgctctccatgatagttta 27887173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 28935872 - 28935918
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    ||||||||||||||||||||| |||| |||| ||||| |||||||||    
T  28935872 tttatgacatgtccataagttttttttagcttatttccataagctct 28935918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 4549538 - 4549587
Alignment:
Q  115 ttatgacatgtccataa-gttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||||| |||| |||||||||| | |||||||||||||||||||    
T  4549538 ttatgacatgtctataaagttgttttcaacaaatttcaataagctctcca 4549587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 6231805 - 6231854
Alignment:
Q  217 gaaataacttatgacatgtccattaactgttttcagcttatatcaataag 266  Q
    |||| |||| ||||||||||||| ||||||||||||||||| || |||||    
T  6231805 gaaacaactaatgacatgtccataaactgttttcagcttatttctataag 6231854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 6279467 - 6279426
Alignment:
Q  120 acatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    ||||||||||||||||||||||||  ||||| ||||||||||    
T  6279467 acatgtccataagttgttttcagcgtatttccataagctctc 6279426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 6659747 - 6659710
Alignment:
Q  121 catgtccataagttgttttcagctaatttcaataagct 158  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  6659747 catgtccataagttgttttcagctcattttaataagct 6659710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 39347970 - 39348007
Alignment:
Q  121 catgtccataagttgttttcagctaatttcaataagct 158  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  39347970 catgtccataagttgttttcagcttatttccataagct 39348007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 40485727 - 40485824
Alignment:
Q  72 ataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||| ||||||||||||| |||| |||| || || ||||    ||||||||||| || || ||| |||||||||| ||| |||||||||||| |||||    
T  40485727 ataagcacttgtgagactgtttgggagaacttattgaaacatcttatgacatgtgcagaatttgctttcagctaacttccataagctctccaaaatag 40485824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 6981566 - 6981506
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctctccataatagtttag 174  Q
    |||||| |||||| ||||||||||||||||  ||||| |||| ||||||| ||||| ||||    
T  6981566 tttatgtcatgtcaataagttgttttcagcatatttccataaactctccagaatagcttag 6981506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 7761607 - 7761651
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagct 158  Q
    ||||||||||||||||||||| ||||||||| ||||  |||||||    
T  7761607 tttatgacatgtccataagtttttttcagcttattttgataagct 7761651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 11129230 - 11129190
Alignment:
Q  188 agtttgacttaacttgatcttttgtttaagaaataacttat 228  Q
    |||||||||||| || |||||||||| ||||||||||||||    
T  11129230 agtttgacttaattttatcttttgttcaagaaataacttat 11129190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 11695935 - 11695879
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctctccataatagt 170  Q
    ||||||||||||||||||| |||||||| || ||||  ||||||| |||| ||||||    
T  11695935 tttatgacatgtccataagctgttttcaacttattttcataagctttccagaatagt 11695879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 12564496 - 12564544
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||| ||| ||||||||||||||||| ||||| ||||| ||||||    
T  12564496 ttatgacaagtcaataagttgttttcagcttatttccataagttctcca 12564544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 15579555 - 15579515
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataa 155  Q
    ||||||||||||||||||||||| |||||| ||||| ||||    
T  15579555 ttatgacatgtccataagttgttctcagcttatttccataa 15579515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 29007712 - 29007756
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagct 158  Q
    ||||||| |||| |||||||||||||||||| ||||| |||||||    
T  29007712 tttatgatatgttcataagttgttttcagcttatttcgataagct 29007756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 30371231 - 30371175
Alignment:
Q  215 aagaaataacttatgacatgtccattaactgttttcagcttatatcaataagctctc 271  Q
    |||||| |||| ||||||||||||| |  |||||||||||||| |||||| ||||||    
T  30371231 aagaaacaactaatgacatgtccataagttgttttcagcttatttcaatacgctctc 30371175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 33527220 - 33527272
Alignment:
Q  176 ttatatgaaaacagtttgacttaacttgatcttttgtttaagaaataacttat 228  Q
    |||||||||||||||||||||  | || ||||||||||| ||||||| |||||    
T  33527220 ttatatgaaaacagtttgactgtattttatcttttgttttagaaatagcttat 33527272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 37659910 - 37659942
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaa 146  Q
    |||||||||||||||| ||||||||||||||||    
T  37659910 tttatgacatgtccattagttgttttcagctaa 37659942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 46252679 - 46252727
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||| |||||||||||||||| | ||||  ||||||||||||    
T  46252679 ttatgacatgttcataagttgttttcaggttattttcataagctctcca 46252727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 49517071 - 49517015
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgtttaagaaataacttat 228  Q
    ||||||| ||||||||| |||||||| | || ||||||||||  |||||||||||||    
T  49517071 tagcttaaatgaaaacaatttgactttattttatcttttgttatagaaataacttat 49517015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 49586932 - 49587041
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctctccataatagtttagcttatatgaaaacagtttgacttaacttgatcttttgtt 213  Q
    |||||||||| |||||||||||||||||| | |||||  ||| |||||||  ||||     ||||||||||||||||||||||| | || ||||||||||    
T  49586932 tttatgacatatccataagttgttttcagtttatttctttaatctctccaagatag-----cttatatgaaaacagtttgactttattttatcttttgtt 49587026  T
Q  214 taagaaataacttat 228  Q
      ||||||| |||||    
T  49587027 atagaaatagcttat 49587041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 54180777 - 54180831
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    ||||||||||||||||||||||||| |||| ||||  ||||||||||||||||||    
T  54180777 ttatgacatgtccataagttgtttttagcttatttatataagctctccataatag 54180831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 37825195 - 37825147
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  37825195 ttatgacatgtccataagttgttttcaggttatttccataagctctcca 37825147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 43115129 - 43115073
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatagtt 171  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||||| || ||||||    
T  43115129 ttatgacatgtccataacttgttttcagcttatttccataagctctcaatgatagtt 43115073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 37273250 - 37273159
Alignment:
Q  72 ataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||| |||| |||||||| |||| |||| || |||||||    ||||||||||||||||||||||||||| || ||||| ||||| ||||||    
T  37273250 ataagcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctcca 37273159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 11039301 - 11039379
Alignment:
Q  80 ttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagct 158  Q
    |||||||||| ||||| ||| || |||||||    |||||||||||||||||||||||||||||| || || |||||||    
T  11039301 ttgtgagactgtttgaaagagcttatggaaacatattatgacatgtccataagttgttttcagcttatctccataagct 11039379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 21862177 - 21862219
Alignment:
Q  120 acatgtccataagttgttttcagctaatttcaataagctctcc 162  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  21862177 acatgtccataagttgttttcagcttatttccataagctctcc 21862219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 13709819 - 13709868
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||| ||||||||||||||||||| | |||||||||| |||||||    
T  13709819 tttatgacaagtccataagttgttttcagtttatttcaataaactctcca 13709868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 36200169 - 36200124
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    |||||||||||||||||||||||||||||| ||||| || ||||||    
T  36200169 ttatgacatgtccataagttgttttcagcttatttccatgagctct 36200124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 45432936 - 45432981
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||||    
T  45432936 ttatgacatgttcataagttgttttcagcttatttccataagctct 45432981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 1810093 - 1810009
Alignment:
Q  72 ataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataag 156  Q
    |||| ||||||||||||| ||||||||| || | |||||    ||||||||||||||| |||||||||| ||| ||||| |||||    
T  1810093 ataatcacttgtgagactatttgagagagcttacggaaacaacttatgacatgtccatgagttgttttctgcttatttctataag 1810009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 5292530 - 5292570
Alignment:
Q  128 ataagttgttttcagctaatttcaataagctctccataata 168  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  5292530 ataagttgttttcagcttatttccataagctctccataata 5292570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 20210882 - 20210966
Alignment:
Q  72 ataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataag 156  Q
    |||| ||||||||||||| ||||||||| || ||| ||| |  |||||| ||||| || |||||||||||||| ||||| |||||    
T  20210882 ataaccacttgtgagactgtttgagagatcttatgcaaacggattatgatatgtctatgagttgttttcagcttatttctataag 20210966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 31010484 - 31010428
Alignment:
Q  216 agaaataacttatgacatgtccattaactgttttcagcttatatcaataagctctct 272  Q
    ||||| |||||||||||||||||| | ||||||||||||||  || |||||||||||    
T  31010484 agaaacaacttatgacatgtccataagctgttttcagcttaattccataagctctct 31010428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 20192603 - 20192650
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcc 162  Q
    |||||||||||||||||| |||||||| || ||||| |||||||||||    
T  20192603 ttatgacatgtccataagctgttttcaactcatttccataagctctcc 20192650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 41724285 - 41724238
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttca-ataagctctc 161  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||||    
T  41724285 ttatgacatgtccataagttgttttcagcttattttatataagctctc 41724238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 3015840 - 3015886
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    |||||||||||||||||| |||||||| || |||| |||||||||||    
T  3015840 ttatgacatgtccataagatgttttcatcttattttaataagctctc 3015886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 12923322 - 12923356
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaattt 149  Q
    |||||||||||||||||||||||||||||| ||||    
T  12923322 ttatgacatgtccataagttgttttcagcttattt 12923356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 30923852 - 30923941
Alignment:
Q  71 tataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    ||||||||||||||||||| |||  |||| || |||||||    |||||||||||| ||||| ||||||||||| ||||| |||| |||||    
T  30923852 tataaacacttgtgagactgtttatgagagct-atggaaacagcttatgacatgtctataagctgttttcagcttatttctataaactctc 30923941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 31010475 - 31010429
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    |||||||||||||||||| ||||||||||| | ||| ||||||||||    
T  31010475 ttatgacatgtccataagctgttttcagcttaattccataagctctc 31010429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 43115137 - 43115083
Alignment:
Q  217 gaaataacttatgacatgtccattaactgttttcagcttatatcaataagctctc 271  Q
    |||| |||||||||||||||||| |  |||||||||||||| || ||||||||||    
T  43115137 gaaacaacttatgacatgtccataacttgttttcagcttatttccataagctctc 43115083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 8007764 - 8007805
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgtt 213  Q
    |||||||||||| ||||||||||||| |||| ||||||||||    
T  8007764 tagcttatatgataacagtttgactttactttatcttttgtt 8007805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 13371177 - 13371136
Alignment:
Q  128 ataagttgttttcagctaatttcaataagctctccataatag 169  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||    
T  13371177 ataagttgttttcagcttatttccataagctcttcataatag 13371136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 23785320 - 23785279
Alignment:
Q  123 tgtccataagttgttttcagctaatttcaataagctctccat 164  Q
    ||||||||||||||||||||||  |||| |||||||||||||    
T  23785320 tgtccataagttgttttcagcttgtttccataagctctccat 23785279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 24281191 - 24281066
Alignment:
Q  44 attgacttattttagtttatctacatctataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagc 143  Q
    |||||||||||| ||| |||||||   ||||| |||||||| || | ||||||||| || ||| |||    |||||| || ||||||||||||||||| |    
T  24281191 attgacttatttgagtctatctactggtataagcacttgtgtgattgtttgagagagcttatgaaaacaacttatgatatctccataagttgttttcaac 24281092  T
Q  144 taatttcaataagctctccataatag 169  Q
    | | ||  ||||||||||||| ||||    
T  24281091 ttactttcataagctctccatgatag 24281066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 24624284 - 24624251
Alignment:
Q  224 cttatgacatgtccattaactgttttcagcttat 257  Q
    |||||||||||||||| |||||||||||||||||    
T  24624284 cttatgacatgtccataaactgttttcagcttat 24624251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 27792932 - 27792887
Alignment:
Q  128 ataagttgttttcagctaatttcaataagctctccataatagttta 173  Q
    ||||||||||||||||| ||||| ||||||||| ||| ||||||||    
T  27792932 ataagttgttttcagcttatttctataagctctacatgatagttta 27792887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 49546494 - 49546535
Alignment:
Q  128 ataagttgttttcagctaatttcaataagctctccataatag 169  Q
    ||||||||||||||||  ||||||||||||||||||| ||||    
T  49546494 ataagttgttttcagcatatttcaataagctctccatgatag 49546535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 41633431 - 41633379
Alignment:
Q  117 atgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||||||| |||| |||||||||||| ||||  |||||||||||| |||||    
T  41633431 atgacatgtctataaattgttttcagcttattttcataagctctccaaaatag 41633379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 42530376 - 42530293
Alignment:
Q  72 ataaacacttgtgagactttttgagagacctcatggaaat-gctt--tatgacatgtccataagttg-ttttcagctaatttca 151  Q
    |||| ||||||||||||| ||| ||| | || |||||||| ||||  ||||||||||||||||| || ||||||||||||||||    
T  42530376 ataagcacttgtgagactgtttcagaaagcttatggaaatagcttattatgacatgtccataagctgtttttcagctaatttca 42530293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 42817220 - 42817248
Alignment:
Q  116 tatgacatgtccataagttgttttcagct 144  Q
    |||||||||||||||||||||||||||||    
T  42817220 tatgacatgtccataagttgttttcagct 42817248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 53848052 - 53848108
Alignment:
Q  217 gaaataacttatgacatgtccattaactgttttcagcttatatcaataagctctctg 273  Q
    ||||| |||| |||||||||||| | |||||||| |||||| || ||||||||||||    
T  53848052 gaaatgacttgtgacatgtccataagctgttttcggcttatttctataagctctctg 53848108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 9423590 - 9423639
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  9423590 tttatgacatgttcataagttgttttcagcttatttcaagaagctctcca 9423639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 33894699 - 33894660
Alignment:
Q  116 tatgacatgtccataagttgttttcagctaatttcaataa 155  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  33894699 tatgacatgtccataagttgttttcagcttatttcaataa 33894660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 39345581 - 39345503
Alignment:
Q  78 acttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataag 156  Q
    |||||||||||| ||||  |||  |||||||||   |||||||||||||||||||||| |||||||| ||||| |||||    
T  39345581 acttgtgagactgtttggtagagttcatggaaacagtttatgacatgtccataagttgctttcagcttatttccataag 39345503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 46082109 - 46082055
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||||||| ||||||||||||||||||| ||||  |||||||||||| |||||    
T  46082109 ttatgacatgaccataagttgttttcagcttattttcataagctctccagaatag 46082055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 24363601 - 24363646
Alignment:
Q  118 tgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||||||||||||||||||| ||||| |||| |||||||    
T  24363601 tgacatgtccataagttgttttcagcttatttccataacctctcca 24363646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 32329142 - 32329093
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccat 164  Q
    ||||||||||||| |||||||||||||||||||  | |||||||||||||    
T  32329142 ttatgacatgtccctaagttgttttcagctaatacctataagctctccat 32329093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 7244825 - 7244705
Alignment:
Q  44 attgacttattttagtttatctacatctataaacacttgtgagactt-tttgagagacctcatggaaatgctttatgacatgtccataagttgttttcag 142  Q
    |||| ||| ||| |||||||||||  | |||||||||| | ||| || ||||| ||| || |||||||   |||||||||||  ||||||||||||||||    
T  7244825 attggcttgtttgagtttatctactgccataaacacttctaagatttgtttgaaagagctgatggaaacaatttatgacatgctcataagttgttttcag 7244726  T
Q  143 ctaatttcaataagctctcca 163  Q
    || ||||  ||||||||||||    
T  7244725 cttattttcataagctctcca 7244705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 12234877 - 12234933
Alignment:
Q  216 agaaataacttatgacatgtccattaactgttttcagcttatatcaataagctctct 272  Q
    ||||| ||||||||||||||| || | ||||||||||||||| || |||||||||||    
T  12234877 agaaacaacttatgacatgtctataagctgttttcagcttatttccataagctctct 12234933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 35267435 - 35267387
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||| |||| ||||||||||||| ||||| ||||||||||||    
T  35267435 ttatgacatgttcataggttgttttcagcttatttctataagctctcca 35267387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 36538024 - 36537952
Alignment:
Q  72 ataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagct 144  Q
    |||||||||||||||| | ||||||||| || |||||||    ||||||||||| ||||||||||||| ||||    
T  36538024 ataaacacttgtgagattgtttgagagaacttatggaaacaacttatgacatgttcataagttgtttttagct 36537952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 39360096 - 39360052
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctc 159  Q
    ||||||||| ||||||||||| |||||||| ||||||||||||||    
T  39360096 ttatgacatatccataagttgctttcagcttatttcaataagctc 39360052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 44151476 - 44151520
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagct 158  Q
    ||||||||||||||||||| ||||||||||| ||||| |||||||    
T  44151476 tttatgacatgtccataagatgttttcagcttatttccataagct 44151520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 36598318 - 36598401
Alignment:
Q  80 ttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||| | ||||||||| || |||||||    ||||||||||| |||||| ||||||||||| ||||||| | ||||||||    
T  36598318 ttgtgagattgtttgagagagcttatggaaacatcttatgacatgttcataagctgttttcagcttatttcaaaacgctctcca 36598401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 257
Target Start/End: Complemental strand, 44808238 - 44808199
Alignment:
Q  218 aaataacttatgacatgtccattaactgttttcagcttat 257  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  44808238 aaataacttatgacatgtccataacctgttttcagcttat 44808199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 6263361 - 6263414
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatag 169  Q
    |||||| |||||||||||||||||| |||| ||||| ||| ||||||||||||||    
T  6263361 ttatgagatgtccataagttgtttt-agcttatttccatatgctctccataatag 6263414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 12234886 - 12234932
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    |||||||||||| ||||| ||||||||||| ||||| ||||||||||    
T  12234886 ttatgacatgtctataagctgttttcagcttatttccataagctctc 12234932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 28727723 - 28727801
Alignment:
Q  78 acttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataag 156  Q
    ||||| |||||| ||||||||| || ||||||| |  ||||||||||| | || ||||||||||||| ||||| |||||    
T  28727723 acttgcgagactgtttgagagagcttatggaaacggcttatgacatgttcgtatgttgttttcagcttatttctataag 28727801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 4966229 - 4966184
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    |||||| ||||||||||||||||||||| | ||||| |||||||||    
T  4966229 ttatgatatgtccataagttgttttcagtttatttccataagctct 4966184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 12834958 - 12834991
Alignment:
Q  224 cttatgacatgtccattaactgttttcagcttat 257  Q
    |||||||||||||||| |||||||||||||||||    
T  12834958 cttatgacatgtccataaactgttttcagcttat 12834991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 39334267 - 39334222
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctc 159  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||||||    
T  39334267 tttatgacatgtccataagttgcattcagcttatttccataagctc 39334222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 39591539 - 39591592
Alignment:
Q  175 cttatatgaaaacagtttgacttaacttgatcttttgtttaagaaataacttat 228  Q
    |||||||||||||| |||||||| | || ||||||||||  |||||||||||||    
T  39591539 cttatatgaaaacaatttgactttattttatcttttgttatagaaataacttat 39591592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 45078360 - 45078319
Alignment:
Q  216 agaaataacttatgacatgtccattaactgttttcagcttat 257  Q
    |||||||||||||||||||||||| | ||||||||| |||||    
T  45078360 agaaataacttatgacatgtccataagctgttttcaacttat 45078319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 45777244 - 45777281
Alignment:
Q  176 ttatatgaaaacagtttgacttaacttgatcttttgtt 213  Q
    |||||||||||||||||||||||| || ||||||||||    
T  45777244 ttatatgaaaacagtttgacttaattttatcttttgtt 45777281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 3500956 - 3500996
Alignment:
Q  217 gaaataacttatgacatgtccattaactgttttcagcttat 257  Q
    ||||||||||||||||||| ||| | |||||||||||||||    
T  3500956 gaaataacttatgacatgtacatcagctgttttcagcttat 3500996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 3610699 - 3610783
Alignment:
Q  77 cacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    ||||||||| |||||||| || |||| |||||||    | ||||||||||||||||   ||||||||| ||||| ||||||||||    
T  3610699 cacttgtgatactttttgggaaaccttatggaaacagctaatgacatgtccataagcctttttcagcttatttctataagctctc 3610783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 6977485 - 6977457
Alignment:
Q  117 atgacatgtccataagttgttttcagcta 145  Q
    |||||||||||||||||||||||||||||    
T  6977485 atgacatgtccataagttgttttcagcta 6977457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 28521009 - 28521053
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctc 159  Q
    |||||||||||| ||||| |||||||||||| |||| ||||||||    
T  28521009 ttatgacatgtctataagctgttttcagctattttccataagctc 28521053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 33645958 - 33646006
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||||| |||||||||||| || | ||||| ||||||||||||    
T  33645958 ttatgacatgtctataagttgtttttaggttatttccataagctctcca 33646006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 39539770 - 39539810
Alignment:
Q  217 gaaataacttatgacatgtccattaactgttttcagcttat 257  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  39539770 gaaacaacttatgacatgtccataagctgttttcagcttat 39539810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 19138713 - 19138764
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctctccata 165  Q
    |||||||||||| ||||| |||||||||||| ||||| ||||||||||||||    
T  19138713 tttatgacatgtacataaattgttttcagcttatttccataagctctccata 19138764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 228
Target Start/End: Complemental strand, 37968946 - 37968836
Alignment:
Q  120 acatgtccataagttgttttcagctaatttcaataagctctccataatag--tttagcttatatgaaaacagtttgacttaacttgatcttttgtttaag 217  Q
    ||||||||||||| |||||| |||| ||||  ||||| ||||||| ||||  |||||||| |||||||||| |||||| | | || ||||||||||  ||    
T  37968946 acatgtccataagctgtttttagcttatttttataagatctccatgatagtttttagcttctatgaaaacactttgacctcattttatcttttgttatag 37968847  T
Q  218 aaataacttat 228  Q
    ||||| |||||    
T  37968846 aaatagcttat 37968836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 35963313 - 35963271
Alignment:
Q  116 tatgacatgtccataagttgttttcagctaatttcaataagct 158  Q
    ||||||||||||||||||||||||||||| ||||| |||||||    
T  35963313 tatgacatgtccataagttgttttcagcttatttccataagct 35963271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 6109599 - 6109510
Alignment:
Q  72 ataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    |||||||||||||||| | |||  |||| || |||||||    |||||| ||||||||||||||||||||||| ||||| | ||||||||    
T  6109599 ataaacacttgtgagaatattttggagagcttatggaaaaaaattatgatatgtccataagttgttttcagcttatttccaaaagctctc 6109510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 18543194 - 18543241
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  18543194 ttatgacatgtccatgagttgttttcagcttatttc-ataagctctcca 18543241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 37690634 - 37690686
Alignment:
Q  116 tatgacatgtccataagttgttttcagctaatttcaataagctctccataata 168  Q
    ||||||||||  ||||| ||||||||||| ||||| |||||||||||||||||    
T  37690634 tatgacatgttaataagctgttttcagcttatttccataagctctccataata 37690686  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 8177529 - 8177604
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatagtttagcttatatgaaaacagttt 192  Q
    |||||| ||||||||||||||||||||| | ||||  ||||||||||||  ||||  |||||  ||||||||||||||    
T  8177529 ttatgatatgtccataagttgttttcaggttattttcataagctctccaggatagcatagct--tatgaaaacagttt 8177604  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 14295507 - 14295457
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgtttaagaaata 222  Q
    |||||||||||||||||||||||||| | || ||||||||||  |||||||    
T  14295507 tagcttatatgaaaacagtttgactttattttatcttttgttatagaaata 14295457  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 32194076 - 32194122
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    ||||||||| |||||||||||||||||||| ||||  ||||||||||    
T  32194076 ttatgacatttccataagttgttttcagcttatttatataagctctc 32194122  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 32223597 - 32223544
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctctccataata 168  Q
    |||||||||||||  |||||||||||||| ||| ||||||||||||| |||||||    
T  32223597 tttatgacatgtct-taagttgttttcagttaagttcaataagctcttcataata 32223544  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 17369436 - 17369481
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    |||||||||||| ||||||||||||||| | ||||| |||||||||    
T  17369436 ttatgacatgtctataagttgttttcagattatttctataagctct 17369481  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 20028500 - 20028541
Alignment:
Q  128 ataagttgttttcagctaatttcaataagctctccataatag 169  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||    
T  20028500 ataagttgttttcagcttatttctataagctcttcataatag 20028541  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 28586728 - 28586809
Alignment:
Q  80 ttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    |||||| ||| |||| |||| || ||||||||   ||||||||| ||| |||| ||||||||||| ||||| ||||||||||    
T  28586728 ttgtgaaactgtttgggagagcttatggaaatagcttatgacatatccgtaagctgttttcagcttatttcgataagctctc 28586809  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 33533535 - 33533584
Alignment:
Q  114 tttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||| | ||||||||||||||| || ||||| ||||||||||||    
T  33533535 tttatgacatattcataagttgttttcaacttatttccataagctctcca 33533584  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 1899227 - 1899187
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataa 155  Q
    ||||||||||| |||||||||||||||||| ||||| ||||    
T  1899227 ttatgacatgtgcataagttgttttcagcttatttccataa 1899187  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 14331440 - 14331392
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||||||||||| || |||||||| ||||  ||||||||||||    
T  14331440 ttatgacatgtccataagctgatttcagcttattttcataagctctcca 14331392  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 15074750 - 15074794
Alignment:
Q  119 gacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||||||||||||| ||||||||||| ||||| ||||||| ||||    
T  15074750 gacatgtccataagctgttttcagcttatttccataagctttcca 15074794  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 29116999 - 29117051
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgtttaagaaataac 224  Q
    ||||||||| |||||||||||||||| | || ||||||||||  |||||||||    
T  29116999 tagcttatacgaaaacagtttgactttattttatcttttgttatagaaataac 29117051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 35135731 - 35135787
Alignment:
Q  172 tagcttatatgaaaacagtttgacttaacttgatcttttgtttaagaaataacttat 228  Q
    ||||||||||||||| |||||||||| | || ||||||||||  ||||||| |||||    
T  35135731 tagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttat 35135787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 40205071 - 40205119
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctcca 163  Q
    |||| ||||||||||||  ||||||||||| ||||| ||||||||||||    
T  40205071 ttataacatgtccataatctgttttcagcttatttctataagctctcca 40205119  T

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Target: scaffold0072 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 5032 - 4951
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctccataatagttta--gcttatatgaaaacagtttga 194  Q
    |||||||||||||||||| || ||| |||| ||||| ||||||| | ||| ||||||||  ||||||||| |||||||||||    
T  5032 ttatgacatgtccataagctgattttagcttatttctataagctatacatgatagtttatggcttatatggaaacagtttga 4951  T

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Target: scaffold0159 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 27075 - 27027
Alignment:
Q  224 cttatgacatgtccattaactgttttcagcttatatcaataagctctct 272  Q
    |||||||||||| ||| ||||||||||||||||| || |||||||||||    
T  27075 cttatgacatgtgcataaactgttttcagcttatttccataagctctct 27027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 159899 - 160015
Alignment:
Q  44 attgacttattttagtttatctacatctataaacacttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagc 143  Q
    |||| ||||||| || ||||||||   ||||||||||||||| ||| |||  |||| || |||||||   ||||||||||||| |||||  |||||||||    
T  159899 attggcttatttgagcttatctactaatataaacacttgtgaaactattttggagaactaatggaaacagtttatgacatgtctataagcagttttcagc 159998  T
Q  144 taatttcaataagctct 160  Q
    | ||||| | |||||||    
T  159999 ttatttccacaagctct 160015  T

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Target: scaffold0311 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 10616 - 10654
Alignment:
Q  117 atgacatgtccataagttgttttcagctaatttcaataa 155  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  10616 atgacatgtccataagttgttttcagcttatttccataa 10654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 6492 - 6538
Alignment:
Q  116 tatgacatgtccataagttgttttcagctaatttcaataagctctcc 162  Q
    ||||||||||| ||||||||||||||| | ||||| |||||||||||    
T  6492 tatgacatgtctataagttgttttcagtttatttccataagctctcc 6538  T

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Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 13512 - 13558
Alignment:
Q  116 tatgacatgtccataagttgttttcagctaatttcaataagctctcc 162  Q
    ||||||||||| ||||||||||||||| | ||||| |||||||||||    
T  13512 tatgacatgtctataagttgttttcagtttatttccataagctctcc 13558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 12701 - 12747
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctctc 161  Q
    |||||||||||||||||||||||||||||| |  || ||||||||||    
T  12701 ttatgacatgtccataagttgttttcagcttagctccataagctctc 12747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 3546 - 3501
Alignment:
Q  115 ttatgacatgtccataagttgttttcagctaatttcaataagctct 160  Q
    |||||| ||||||||||||||||||||||| ||||| |||| ||||    
T  3546 ttatgatatgtccataagttgttttcagcttatttccataatctct 3501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 33637 - 33678
Alignment:
Q  128 ataagttgttttcagctaatttcaataagctctccataatag 169  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||    
T  33637 ataagttgttttcagcttatttccataagctcttcataatag 33678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 51938 - 51974
Alignment:
Q  104 atggaaatgctttatgacatgtccataagttgttttc 140  Q
    ||||||||  |||||||||||||||||||||||||||    
T  51938 atggaaataatttatgacatgtccataagttgttttc 51974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 27686 - 27614
Alignment:
Q  78 acttgtgagactttttgagagacctcatggaaatgctttatgacatgtccataagttgttttcagctaatttc 150  Q
    |||| ||||||| |||| |||| || ||||||||   |||||||||| | ||||||||||||||||| |||||    
T  27686 acttctgagactgtttgggagagcttatggaaatagcttatgacatggctataagttgttttcagcttatttc 27614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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