View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_53 (Length: 284)
Name: NF18453_low_53
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 38 - 273
Target Start/End: Original strand, 49106138 - 49106376
Alignment:
| Q |
38 |
aaatgcaaccactcaagagttcataatacaatataat-ataaatatcctagttgttctccaaacacaatacacaatccacaaataaagcaaaaattttgt |
136 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49106138 |
aaatgcaaccactcaagagttcataatacaatataattataaatatcctagttgttctccaaacacaatacacaatccacaaataaagcaaaaattttgt |
49106237 |
T |
|
| Q |
137 |
cccttgactttggaatggatgttgctggtgaggttgatagggaggagattaggttagctcacagcagttttccatcacgtttctgcaactaaaatcttga |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | ||||||||||||||||| || |
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| T |
49106238 |
cccttgactttggaatggatgttgctggtgaggttgatagggaggaaattaggttagctaacagcagttttccatcaagcttctgcaactaaaatctaga |
49106337 |
T |
|
| Q |
237 |
cttaaataatgcaac--atgagaagcccaataatattga |
273 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
49106338 |
gttaaataatgcaacatatgagaagcccaataatattga |
49106376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 7909044 - 7908997
Alignment:
| Q |
36 |
aaaaatgcaaccactcaagagttcataatacaatataa-tataaatat |
82 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||| ||||||||| |
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|
| T |
7909044 |
aaaaatgcaaccacccaagagttcaaaatacaatataattataaatat |
7908997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 253 - 284
Target Start/End: Original strand, 49106374 - 49106405
Alignment:
| Q |
253 |
tgagaagcccaataatattgaagtgacctctc |
284 |
Q |
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|
| T |
49106374 |
tgagaagcccaataatattgaagtgacctctc |
49106405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 7787225 - 7787192
Alignment:
| Q |
38 |
aaatgcaaccactcaagagttcataatacaatat |
71 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |
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|
| T |
7787225 |
aaatgcagccactcaagagttcataatacaatat |
7787192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 29351159 - 29351123
Alignment:
| Q |
38 |
aaatgcaaccactcaagagttcataatacaatataat |
74 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
29351159 |
aaatgcaaccacccaagagttcataatacaatataat |
29351123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 4030112 - 4030148
Alignment:
| Q |
38 |
aaatgcaaccactcaagagttcataatacaatataat |
74 |
Q |
| |
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|||||||||| | |||||||||||||||||||||||| |
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|
| T |
4030112 |
aaatgcaaccgcccaagagttcataatacaatataat |
4030148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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