View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_55 (Length: 276)
Name: NF18453_low_55
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 22016653 - 22016407
Alignment:
| Q |
20 |
aaacgcagggttcttatgtctggttccattcattatcctcgtagcactcctcaggttccttgtcnnnnnnnnnnnnnnnnnnnnnnatacacccgtgtag |
119 |
Q |
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| T |
22016653 |
aaacgcagggttcttatgtctggttccattcattatcctcgtagcactcctcaggttccttgtcttttctctctgtttttttttttatacacccgtgtag |
22016554 |
T |
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| Q |
120 |
cacgtagcactaacacttcagattgaaaatgtgtcttgtgtttaacatttgtcggtgttatataccattatgacactgatatatgggattacatttaatg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22016553 |
cacgtagcactaacacttcagattgaaaatgtgtcttgtgtttaacatttgtcggtgttatataccattatgacactgatatatgggattacatttaatg |
22016454 |
T |
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| Q |
220 |
acatttatttattttttcttctaactattattacaatgtttacgtgtc |
267 |
Q |
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| T |
22016453 |
acatttattt-ttttttcttctaactattattacaatgtttacgtgtc |
22016407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 40097577 - 40097614
Alignment:
| Q |
38 |
tctggttccattcattatcctcgtagcactcctcaggt |
75 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
40097577 |
tctggttcaattcattatcctcgtagcactcctcaggt |
40097614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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