View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_56 (Length: 273)
Name: NF18453_low_56
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 39781588 - 39781428
Alignment:
| Q |
8 |
tgaaaagaaataagatatgaacatgattatatttaaggaaaataggagcaaaccagttgtaaggtgagaacatcagaattgattctaatagactctcctc |
107 |
Q |
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| T |
39781588 |
tgaaaagaaataagatatgaacatgattatatttaaggaaaataggagcaaaccagttgtaaggtgagaacatcagaattgattctaatagactctcctc |
39781489 |
T |
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| Q |
108 |
cgacacatctgatagagcttgaaacatttggaattgaaattcctcccggaatgtccaaagg |
168 |
Q |
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| T |
39781488 |
cgacacatctgatagagcttgaaacatttggaattgaaattcctcccggaatgtccaaagg |
39781428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 56 - 249
Target Start/End: Complemental strand, 39793450 - 39793257
Alignment:
| Q |
56 |
caaaccagttgtaaggtgagaacatcagaattgattctaatagactctcctccgacacatctgatagagcttgaaacatttggaattgaaattcctcccg |
155 |
Q |
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| T |
39793450 |
caaacctgttgcagggagagaacatctgaattgattctaatagattctcctccaacacatctgatagaatttgaaacatctggaattgaaacccctcccg |
39793351 |
T |
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| Q |
156 |
gaatgtccaaaggacgacactgttcttcattgaggaggatcaaccgtgaaccagtcttacaattgtcaaagttgatatcttttgttaaatcaaa |
249 |
Q |
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| T |
39793350 |
gaatctccaaacgacggcactgttctttatcgatgaggatcaaccgtgaaccagtcttacagttgtcaaagttgatatcttgtgttaaatcaaa |
39793257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 39787872 - 39787760
Alignment:
| Q |
137 |
ggaattgaaattcctcccggaatgtccaaaggacgacactgttcttcattgaggaggatcaaccgtgaaccagtcttacaattgtcaaagttgatatctt |
236 |
Q |
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| T |
39787872 |
ggaattgaaacccctcccggaatctccaaacgacggctctcttcttcatcggtgaggattaactgtgaaccagtcttacagttgtcaaagttaatatctt |
39787773 |
T |
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| Q |
237 |
ttgttaaatcaaa |
249 |
Q |
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| T |
39787772 |
gtgttaaatcaaa |
39787760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 39775576 - 39775404
Alignment:
| Q |
68 |
aaggtgagaacatcagaattgattctaatagactctcctccgacacatctgatagagcttgaaacatttggaattgaaattcctcccggaatgtccaaag |
167 |
Q |
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| T |
39775576 |
aaggtgagaacatctgaatggattctaatagattctcctctgacacatttgacagagtttgaaacatttggaattgtaacaccaccaggaagctccaaat |
39775477 |
T |
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| Q |
168 |
gacgacactgttct---tcattgaggaggatcaaccgtgaacc---agtcttacaattgtcaaagttgatatc |
234 |
Q |
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| T |
39775476 |
gacggcagtgttgttgattattgatgaagatcaaaggtgaaccaatactcttacaattgtcaaagttgatatc |
39775404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 39787922 - 39787874
Alignment:
| Q |
68 |
aaggtgagaacatcagaattgattctaatagactctcctccgacacatc |
116 |
Q |
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| T |
39787922 |
aaggtgaggatatctgaattgattctaatagattctcctccaacacatc |
39787874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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