View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_58 (Length: 256)
Name: NF18453_low_58
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 38612916 - 38613158
Alignment:
| Q |
1 |
atgtttggtgtccgaccccgacacatgcgagtgcattcagttaattcattttctataattattatgctagcatgggtgtcgcatccggtgtttgtgtagg |
100 |
Q |
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| T |
38612916 |
atgtttggtgtccgacac-gacacatgcgagtacattcagttaattcattttctataattattatgctagcgtgggtgtcgcatccggtgtttgtgtagg |
38613014 |
T |
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| Q |
101 |
tacttcataggttagcacatgtgggtaattaaattggagtcggcttatcgataatctttaatttaatccataaaccctacatctataccgtggcttggtg |
200 |
Q |
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| T |
38613015 |
tacttcataggttagcacatgtgggtaattaaattggagtcggcttatcgataatctttaatttaatccataaaccctacatctataccgtggcttggtg |
38613114 |
T |
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| Q |
201 |
aagttttaagtttttgtaactctcatgtaattcttgtggtttcat |
245 |
Q |
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| T |
38613115 |
aag-tttaagtttttgtaactctcatgtaattcttgtggtttcat |
38613158 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 6294544 - 6294588
Alignment:
| Q |
21 |
acacatgcgagtgcattcagttaattcattttctataattattat |
65 |
Q |
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| T |
6294544 |
acacatgcgattgcattcaattaattcattttctcaaattattat |
6294588 |
T |
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