View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_65 (Length: 238)
Name: NF18453_low_65
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 42966536 - 42966320
Alignment:
| Q |
1 |
cgtttgttaaaattgactagggtttaatcgggcgtgctgttgttttttattgtatttcacattagaattcatgcacttgaattcactggatcaggtttta |
100 |
Q |
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| T |
42966536 |
cgtttgttagaattgactagggtttaatcggacgtgctgctgttttttattgtattttacgttagaattcatgcacttgaattcactggatcaggtttta |
42966437 |
T |
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| Q |
101 |
tatccaccagtttttatgnnnnnnnnnaaataatatgtacctttttgcaattttcttatcatcatcaacaacaagaagaaaattttcatgtacctctcaa |
200 |
Q |
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| T |
42966436 |
tatcccccagtttttatgtttttttt--aataatatgtacctttttgcaattttcttatcatcatcaacaacaacaagaaatttttcatgtacctctcaa |
42966339 |
T |
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| Q |
201 |
gttccttaatgaggcttat |
219 |
Q |
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||||||||||||||||||| |
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| T |
42966338 |
gttccttaatgaggcttat |
42966320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 5535393 - 5535276
Alignment:
| Q |
1 |
cgtttgttaaaattgactagggtttaatcgggcgtgctgttgttttttattgtatttcacattagaattcatgcacttgaattcactggatcaggtttta |
100 |
Q |
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||||||||| |||||||||||||| ||| | | || ||||||| || ||||||||| | |||| |||||||||||||||||| ||| |||||||||| |
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| T |
5535393 |
cgtttgttagaattgactagggttgaattgagtatgttgttgttattggttgtatttctcgttagggttcatgcacttgaattcattgggtcaggtttta |
5535294 |
T |
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| Q |
101 |
tatccaccagtttttatg |
118 |
Q |
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| T |
5535293 |
tgtcccccattttttatg |
5535276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 19813645 - 19813714
Alignment:
| Q |
50 |
ttgtatttcacattagaattcatgcacttgaattcactggatcaggttttatatccac-cagtttttatg |
118 |
Q |
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| T |
19813645 |
ttgtatttccctttagggttcatgcacttggattcactgggtcaggttttatgtccccgcagtttttatg |
19813714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 10280154 - 10280037
Alignment:
| Q |
1 |
cgtttgttaaaattgactagggtttaatcgggcgtgctgttgttttttattgtatttcacattagaattcatgcacttgaattcactggatcaggtttta |
100 |
Q |
| |
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||||||||| ||||||||||| || ||||| | ||||| |||| || ||||||||| | || | |||||||||||||||||||||| |||| ||||| |
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| T |
10280154 |
cgtttgttagaattgactaggattgaatcgagtatgctgctgttattggttgtatttcccgtttgggttcatgcacttgaattcactgggtcagatttta |
10280055 |
T |
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| Q |
101 |
tatccaccagtttttatg |
118 |
Q |
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| ||| | | |||||||| |
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| T |
10280054 |
tgtcccctaatttttatg |
10280037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 18171691 - 18171726
Alignment:
| Q |
133 |
atatgtacctttttgcaattttcttatcatcatcaa |
168 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
18171691 |
atatgtacctttttgcaattttcttatgatcatcaa |
18171726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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