View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18453_low_68 (Length: 237)

Name: NF18453_low_68
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18453_low_68
NF18453_low_68
[»] scaffold0291 (2 HSPs)
scaffold0291 (2-117)||(5221-5336)
scaffold0291 (140-222)||(5133-5223)


Alignment Details
Target: scaffold0291 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 5336 - 5221
Alignment:
Q  2 ccatccaagaatttctctatatacataaccatttcataaatggggaagatgaagtgtcatagtaaaaaatataaaatacatacttaataaacaacaagca 101  Q
    |||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5336 ccatccaagaatttccgtacatacataaccatttcataaatggggaagatgaagtgtcatagtaaaaaatataaaatacataattaataaacaacaagca 5237  T
Q  102 tattaactttaagaaa 117  Q
    ||||||||||||||||    
T  5236 tattaactttaagaaa 5221  T

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Target: scaffold0291; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 5223 - 5133
Alignment:
Q  140 aaaggcccaacttttttgttaaagtattttccaagagaggctcactcactcac--------tcacatatctatggttaaaagagttcaatc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  5223 aaaggcccaacttttttgttaaagtattttccaagagaggctcactcactcactcactcactcacatatctatggttaaaagagttcaatc 5133  T

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