View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_74 (Length: 214)
Name: NF18453_low_74
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_74 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 46358850 - 46359064
Alignment:
| Q |
1 |
tgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46358850 |
tgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctc |
46358949 |
T |
|
| Q |
101 |
atcactacccctgttctggaatcccttgtttcagaaatatgccg-tggttccactgatgataatattcatctaaggaagaacggcatattttttctgtgg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46358950 |
atcactacccctgttctggaatcccttgtttcagaaatatgccgctggttccactgatgataatattcatctaaggaagaacgacatattttttctgtgg |
46359049 |
T |
|
| Q |
200 |
gaattgcttaagcat |
214 |
Q |
| |
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||||||||||||||| |
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| T |
46359050 |
gaattgcttaagcat |
46359064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 44459279 - 44459420
Alignment:
| Q |
1 |
tgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459279 |
tgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctc |
44459378 |
T |
|
| Q |
101 |
atcactacccctgttctggaatcccttgtttcagaaatatgc |
142 |
Q |
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| T |
44459379 |
atcactacccctgttctggaatcccttgtttcatcaatatgc |
44459420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 44466812 - 44466953
Alignment:
| Q |
1 |
tgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44466812 |
tgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctc |
44466911 |
T |
|
| Q |
101 |
atcactacccctgttctggaatcccttgtttcagaaatatgc |
142 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44466912 |
atcactacccctgttctggaatcccttgtttcatcaatatgc |
44466953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 44459972 - 44460194
Alignment:
| Q |
1 |
tgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaata---aca----- |
92 |
Q |
| |
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||||||||| | ||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||| || ||||| || | ||| |
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| T |
44459972 |
tgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggcttggatgaggaggaacacttat |
44460071 |
T |
|
| Q |
93 |
-aggacctcatcactacccctgttctggaatcccttgtttcagaaatatgccgtggttccactgatgataatattcatctaaggaagaacggcatatttt |
191 |
Q |
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| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
44460072 |
caagatctcatcactacccctgttctggaatcccttgtttcagaaatatgtcgtggttccaccgatgataatattcatctaaggaagaacgacatatttt |
44460171 |
T |
|
| Q |
192 |
ttctgtgggaattgcttaagcat |
214 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
44460172 |
ttctgtgggaattgcttaagcat |
44460194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 44467505 - 44467727
Alignment:
| Q |
1 |
tgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaata---aca----- |
92 |
Q |
| |
|
||||||||| | ||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||| || ||||| || | ||| |
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| T |
44467505 |
tgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggcttggatgaggaggaacacttat |
44467604 |
T |
|
| Q |
93 |
-aggacctcatcactacccctgttctggaatcccttgtttcagaaatatgccgtggttccactgatgataatattcatctaaggaagaacggcatatttt |
191 |
Q |
| |
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| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
44467605 |
caagatctcatcactacccctgttctggaatcccttgtttcagaaatatgtcgtggttccaccgatgataatattcatctaaggaagaacgacatatttt |
44467704 |
T |
|
| Q |
192 |
ttctgtgggaattgcttaagcat |
214 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
44467705 |
ttctgtgggaattgcttaagcat |
44467727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 34502571 - 34502468
Alignment:
| Q |
98 |
ctcatcactacccctgttctggaatcccttgtttcagaaatatgccgtggttccactgatgataatattcatctaaggaagaacggcatattttttctgt |
197 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||| |||||| |||||||| ||| ||||||||| ||||||||||||| | ||| | |||||||| |
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| T |
34502571 |
ctcattactacccttgttctggaatcccttgtttcagcaatatgtggtggttccgttgaagataatatttatctaaggaagaatgacatgtattttctgt |
34502472 |
T |
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| Q |
198 |
ggga |
201 |
Q |
| |
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|||| |
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| T |
34502471 |
ggga |
34502468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 40180968 - 40180851
Alignment:
| Q |
3 |
aaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctcat |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| ||| ||||||||||| ||||| || | ||||||||||||||||| ||| | ||||| |
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|
| T |
40180968 |
aaacctcttgtcaaactaaatttgttgaaacacca---------ccttataatcttatccactttgtagaattggtttggaagaataataagaatctcat |
40180878 |
T |
|
| Q |
103 |
cactacccctgttctggaatcccttgt |
129 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
40180877 |
cactacccctgttctggaatcccttgt |
40180851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 40181647 - 40181526
Alignment:
| Q |
1 |
tgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctc |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||| | | |||| |||||| |||||||| |||| |||||| || |||||||| |||| ||||| ||| |
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|
| T |
40181647 |
tgaaacctcttgtcaaactaaattagctgaaaccctagaagttccacctcagaatcttatatacttcataaagatgctttggaaggataataaggatctc |
40181548 |
T |
|
| Q |
101 |
atcactacccctgttctggaat |
122 |
Q |
| |
|
||| ||||| |||| |||||| |
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|
| T |
40181547 |
atcgatacccatgttttggaat |
40181526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 38606125 - 38605999
Alignment:
| Q |
3 |
aaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctcat |
102 |
Q |
| |
|
|||||||||||||||| ||||| ||| || |||||||||| |||||| || |||||| || |||| || ||||||||| ||| | ||| ||| || |
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|
| T |
38606125 |
aaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttatcttgttcataaggtgggtttggaaaaattataagtgcctaat |
38606026 |
T |
|
| Q |
103 |
cactacccctgttctggaatcccttgt |
129 |
Q |
| |
|
||||||||||||||| ||||||||||| |
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|
| T |
38606025 |
cactacccctgttctcgaatcccttgt |
38605999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 38605336 - 38605292
Alignment:
| Q |
98 |
ctcatcactacccctgttctggaatcccttgtttcagaaatatgc |
142 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| ||||||| |
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|
| T |
38605336 |
ctcatcactacccctgttttggaatctcttgtttcagcaatatgc |
38605292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 41885617 - 41885757
Alignment:
| Q |
3 |
aaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctcat |
102 |
Q |
| |
|
||||||||||||||| |||||| ||| || ||||||| |||| |||||||||| |||| ||||| ||| | | ||||||||| || ||| ||||| | |
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| T |
41885617 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataattttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgt |
41885716 |
T |
|
| Q |
103 |
cacta-cccctgttctggaatcccttgtttcagaaatatgc |
142 |
Q |
| |
|
| || || |||| |||||||||||||||||| ||||||| |
|
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| T |
41885717 |
tagtatccactgtactggaatcccttgtttcatcaatatgc |
41885757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 40188534 - 40188598
Alignment:
| Q |
51 |
ataatcttatcaactttataaagttggtttggaagaataacaaggacctcatcactacccctgtt |
115 |
Q |
| |
|
||||||||||| ||| |||||| |||| | |||||||||| ||||| ||| ||||||||| |||| |
|
|
| T |
40188534 |
ataatcttatccactatataaaattggctcggaagaataataaggatctcttcactacccttgtt |
40188598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 410692 - 410732
Alignment:
| Q |
102 |
tcactacccctgttctggaatcccttgtttcagaaatatgc |
142 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| ||||||| |
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|
| T |
410692 |
tcactacccctgttctggagtcccttatttcagcaatatgc |
410732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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