View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_8 (Length: 712)
Name: NF18453_low_8
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 646; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 20 - 697
Target Start/End: Original strand, 38468392 - 38469068
Alignment:
| Q |
20 |
agtctaattcacttaacatggcatgcatgcacgcacgtgtacaacagtgtatttaacgtgccacattagcgcccctaactcttttaactaacattgtgca |
119 |
Q |
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| T |
38468392 |
agtctaattcacttaacatggcatgcatgcacgcacgtgtacagcagtgtatttaacgtgccacattagcgcccctaactcttttaactaacattgtgca |
38468491 |
T |
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| Q |
120 |
aaaatggtggttacaattgtatagttggcatttaagtagtaaatgttgaaccatctacggttcctaggtttcccttacagaatggtcacttctgaactcc |
219 |
Q |
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| T |
38468492 |
aaaatggtggttacaattgtatagttggcatttaagtagtaaatgttgaaccatctacggttcctcggtttgccttacagaatggtcacttctgaactcc |
38468591 |
T |
|
| Q |
220 |
tggacttgatctttgatccatatcattctgccttactcgattaggactcaacctcaagtcaagctatgcttcattgtcaaagtatggtaaacgatcgaca |
319 |
Q |
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| T |
38468592 |
tggacttgatctttgatccatatcattctgccttactcgattaggactcaacctcaagtcaagctatgcttcattgtcaaagtatggtaaacaatcgaca |
38468691 |
T |
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| Q |
320 |
acactgaaggttgtagcaactttataggtgcttaaagttttaccttgtaaatatgtccgtcttatgcacaactctgaacaaaccatcatctgttaaggaa |
419 |
Q |
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| T |
38468692 |
acactgaaggttgtagcaactttataggtgcttaaagttttaccttgtaaatatgtccgtcttatgcacaactctgaacaaaccatcatctgttaaggaa |
38468791 |
T |
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| Q |
420 |
tcattggcatttggttgattaaaaaattgttcttttcgcatgtgtatccttaccaggtctccttctatgaaagtgtgcagcctacaatgtttgtcaaact |
519 |
Q |
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| T |
38468792 |
tcattggcatttggttgattaaaaaattgttcttttcgcatgtgtatctttaccaggtctccttctatgaaagtgtgcagcctacaatgtttgtcaaact |
38468891 |
T |
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| Q |
520 |
tagttttatatcttaatttattttttagattattgcatgaaattgctcacacaacttcttgatctcattgcttggttgatggaattgctataggggaatt |
619 |
Q |
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| T |
38468892 |
tagttttatatcttaatttattttttagattattgcatgaaattgctcacgcaacttcttgatctcattgcttggttgatggaattgctataggggaatt |
38468991 |
T |
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| Q |
620 |
caaccagtgcaaagatattttaaattcttcttgacaaagctttgaagtagattcctcaaaagcttgtcggtacctatg |
697 |
Q |
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| T |
38468992 |
caaccagtgcaaagatattttaaattcttcttgacaaagctttg-agtagattcctcaaaagcttgtcggtacctatg |
38469068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 83 - 457
Target Start/End: Original strand, 38467807 - 38468210
Alignment:
| Q |
83 |
cattagcgcccctaactcttttaactaacattgtgcaaaaatggtggttacaattgtatagttggcatttaagtagtaa----atgttgaaccatctacg |
178 |
Q |
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| T |
38467807 |
cattagcgcccctaactcttttaactaacatggtgcaaaattggtggttagaattatattattgacattaaagtaggtagtggatgttgaaccatctgca |
38467906 |
T |
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| Q |
179 |
gttcctaggtttcccttacagaatggtcacttc-------------------tgaactcctggacttgatctttgatccatatcattctgccttactcga |
259 |
Q |
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| T |
38467907 |
attccttggttttccttacataatggtcggttcatgtattgggtcttcgggatgaactcctggactagat-tttgatccatatcattctcctttatttga |
38468005 |
T |
|
| Q |
260 |
ttaggactcaacctcaagtcaagctatgcttcattgtcaaagtatggtaaacgatcgacaacactgaaggttgtagca---actttataggtgcttaaag |
356 |
Q |
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| T |
38468006 |
ttaggactcatcctcaaatcaagttatgattcattgtcaaagtacagtaaaagatcgacagcattgtagaatgtactactgactttataggtgcttaaaa |
38468105 |
T |
|
| Q |
357 |
ttttaccttgtaaatatgtcc----gtcttatgcacaactctgaacaaaccatcatctgttaaggaatcattggcatttggttgattaaaaaattgttct |
452 |
Q |
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| T |
38468106 |
ttttaccatgtaagcaagttcattgatcttatgcacaactttgaacaaaccatcatctgttgaggaaatcttggcatttagttgatttaaaaattgttcc |
38468205 |
T |
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| Q |
453 |
tttcg |
457 |
Q |
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| T |
38468206 |
tttcg |
38468210 |
T |
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