View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_low_9 (Length: 695)
Name: NF18453_low_9
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 22 - 684
Target Start/End: Original strand, 1884532 - 1885198
Alignment:
| Q |
22 |
ctcgttgccacgatagtccatgattctgaaaaa-tacaaatcagtctctcactccaactttcgttagtcattttagtccttgatgttaattttggccgtt |
120 |
Q |
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||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |
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| T |
1884532 |
ctcgttgccacgatagttcatgattcagaaaaaatacaaatcagtctctcactccagttttcgttagtcattttagtccttgatgttaattttgacagtt |
1884631 |
T |
|
| Q |
121 |
gaaaactgggttggnnnnnnnatttgctgacaaggatgtatgatgtcgcatagggactaaagtgacagaaaccaaaactcattttattagtaaccaagtg |
220 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
1884632 |
aaaaactgggttggtttttttatttgctgacaaggatgtatgatgtcgcatagggactaaagtgacagaaaccagaagtcattttattagtaaccaagtg |
1884731 |
T |
|
| Q |
221 |
ttgtttcccattctccatccaaacaaaaacttgtcatttcccttgacccattccgtcgaaaaaagcaaaacaattgtcgttcatttgt---tcgttcact |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
1884732 |
ttgtttcccattctccatccaaacaaaaacttttcatttcccttgacccattccgtccaaaaaagcaaaacaattgtcgttcatttgttgttcgttcact |
1884831 |
T |
|
| Q |
318 |
gcgtttctccatcagtcctaccctcgtcatcgttacaccgtcgcctgaccattagcttgtttcatttgaaacccacaaccgcaaggttagtgatagtaac |
417 |
Q |
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|||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
1884832 |
gcgtttctccatcagtcctaccctcgtcgtcgttgcgccgtcgcctgaccattagcttgttttatttgaaacccacaaccacaaggttagtgatagtaac |
1884931 |
T |
|
| Q |
418 |
tgaacattgtcaatgacctaactgatagtaagtgaaaactgtcagggatcttaatgacagtaagtgaacactaccatggacctaagtaaattctgctaat |
517 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1884932 |
tgaacattgtcaatgacctaactgatagtaagtaaaaactgtcagggacctagctgacagtaagtgaacactaccatggacctaagtaaattctgctaat |
1885031 |
T |
|
| Q |
518 |
gaccatatacctaatattttttgtttatgtattctatttgtgcatttccttatccctgctttacaagaaatgaatgttttcatacttatgtttattctga |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1885032 |
gaccatatacctaatattttttgtttatgtattctatttgtgcagggccttatccctgctttacaagaaatgaatgttttcatacttatgtttattctga |
1885131 |
T |
|
| Q |
618 |
tcataaagttcttagtgataaagtaaagcattcatgtgattcgatttttcaccaccaccccattctt |
684 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1885132 |
tcataaagttcttagtgacaaagtaaagcattcatgtgattcgatttttcaccaccaccccattctt |
1885198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 1885273 - 1885302
Alignment:
| Q |
156 |
atgtatgatgtcgcatagggactaaagtga |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
1885273 |
atgtatgatgtcgcatagggactaaagtga |
1885302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 17589602 - 17589553
Alignment:
| Q |
148 |
tgacaaggatgtatgatgtcgcatagggactaaagtgacagaaaccaaaa |
197 |
Q |
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|
| T |
17589602 |
tgacaaggatgaatgatgtggcatagggaccaaagtgaaagcaaccaaaa |
17589553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 38411069 - 38411122
Alignment:
| Q |
199 |
tcattttattagtaaccaagtgttgtttcccattctccatccaaacaaaaactt |
252 |
Q |
| |
|
||||||||||||||||||| |||| ||| | ||||||| ||||||| ||||||| |
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|
| T |
38411069 |
tcattttattagtaaccaaatgttattttctattctccctccaaaccaaaactt |
38411122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 422 - 450
Target Start/End: Complemental strand, 45583964 - 45583936
Alignment:
| Q |
422 |
cattgtcaatgacctaactgatagtaagt |
450 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
45583964 |
cattgtcaatgacctaactgatagtaagt |
45583936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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