View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18454_high_3 (Length: 434)
Name: NF18454_high_3
Description: NF18454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18454_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Original strand, 31050936 - 31051337
Alignment:
| Q |
15 |
gaacacccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagtgaatgcctgaaatgca |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31050936 |
gaacacccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagcgaatgcctgaaatgca |
31051035 |
T |
|
| Q |
115 |
cctattgaaatttcatcggtaaaaatttcttcaaaatttgaactaggtcggcctccaacagaaactgagattatatcaacaccatcactaatggcttgat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31051036 |
cctattgaaatttcatcggtaaaaatttcttcaaaatttgaactagatcggcctccaacagaaactgagattatatcaacaccatcactaatggcttgat |
31051135 |
T |
|
| Q |
215 |
cgatagcagataatatatcagcaccataacaaactgcactatttccatctgcaattgtttgagaccaacacactttgtaggttacaactcttgattttgg |
314 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31051136 |
cgatagcagataatacatcagcaccataacaaactgcactatttccatctgcaattgtttgagaccaacacactttgtaggttacaactcttgattttgg |
31051235 |
T |
|
| Q |
315 |
tgaaccacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtttccaccagctgttgatagtgtgtgagtaccatggccgtaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31051236 |
tgaaccacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtttccaccagctgttgatagtgtgtgagtaccatggccgtaa |
31051335 |
T |
|
| Q |
415 |
aa |
416 |
Q |
| |
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|| |
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|
| T |
31051336 |
aa |
31051337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 15 - 410
Target Start/End: Original strand, 31108488 - 31108871
Alignment:
| Q |
15 |
gaacacccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagtgaatgcctgaaatgca |
114 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||| ||| | ||| ||||||||| |
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|
| T |
31108488 |
gaacacccatggagcaacattaacaacacttccaggggtaggtccttcatttcccgcagatgcaactaataatatatttctagcaagtgcatgaaatgca |
31108587 |
T |
|
| Q |
115 |
cctattgaaatttcatcggtaaaaatttcttcaaaatttgaactaggtcggcctccaacagaaactgagattatatcaacaccatcactaatggcttgat |
214 |
Q |
| |
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||||||||||| || || ||||||||||||||| |||||| ||||| | |||||||| ||||||| || ||||| |||||||||||| ||| ||||||| |
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| T |
31108588 |
cctattgaaatctcgtcagtaaaaatttcttcagaatttgtactagatgggcctccagcagaaacagatattatgtcaacaccatcatcaattgcttgat |
31108687 |
T |
|
| Q |
215 |
cgatagcagataatatatcagcaccataacaaactgcactatttccatctgcaattgtttgagaccaacacactttgtaggttacaactcttgattttgg |
314 |
Q |
| |
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| ||||||||||||| |||||||||| | || |||| | |||| |||| ||||||| ||||||||||||||| ||||||| | | |||| |
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| T |
31108688 |
caatagcagataatacatcagcaccaaagca------actagtggcatc------tgttagagaccagcacactttgtaggttgcaactctagctcttgg |
31108775 |
T |
|
| Q |
315 |
tgaaccacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtttccaccagctgttgatagtgtgtgagtaccatggcc |
410 |
Q |
| |
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|||||| ||||| ||||||||||| || || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
31108776 |
tgaacctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaaatttccaccagctgttgatagtgtgtgagtaccatggcc |
31108871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 31063405 - 31063778
Alignment:
| Q |
19 |
acccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagtgaatgcctgaaatgcaccta |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||| ||| | ||| ||||||||||||| |
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|
| T |
31063405 |
acccaaggagcaacattaacaacacttccaggggtaggtccttcatttcccgcagatgcaactaataatatatttctagcaagtgcatgaaatgcaccta |
31063504 |
T |
|
| Q |
119 |
ttgaaatttcatcggtaaaaatttcttcaaaatttgaactaggtcggcctccaacagaaactgagattatatcaacaccatcactaatggcttgatcgat |
218 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||| ||||| | |||||||| ||||||| || ||||| |||||||||||| ||| |||||||| || |
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|
| T |
31063505 |
ttgaaacctcgtcggtaaaaatttcttcagaatttgtactagatgggcctccagcagaaacagatattatgtcaacaccatcatcaattgcttgatcaat |
31063604 |
T |
|
| Q |
219 |
agcagataatatatcagcaccataacaaactgcactatttccatctgcaattgtttgagaccaacacactttgtaggttacaactcttgattttggtgaa |
318 |
Q |
| |
|
||||||||||| |||||||||| | ||| | | | ||| |||| ||||||| ||||||||||||||| ||||||| | | |||||||| |
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|
| T |
31063605 |
agcagataatacatcagcaccaaagcaa------------ctagcggcatctgttagagaccagcacactttgtaggttgcaactctagctcttggtgaa |
31063692 |
T |
|
| Q |
319 |
ccacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtttccaccagctgttgatagtgtgtgagtacc |
404 |
Q |
| |
|
|| ||||| ||||||||||| || || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
31063693 |
cctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaagtttccaccggctgttgatagtgtatgagtacc |
31063778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 410
Target Start/End: Original strand, 31146238 - 31146621
Alignment:
| Q |
15 |
gaacacccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagtgaatgcctgaaatgca |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| ||| ||| | ||| ||||||||| |
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|
| T |
31146238 |
gaacacccatggagcaacattagtaacacttccaggggtaggtccttcatttccagccgatgcaactaataatatatttctagcaagtgcatgaaatgca |
31146337 |
T |
|
| Q |
115 |
cctattgaaatttcatcggtaaaaatttcttcaaaatttgaactaggtcggcctccaacagaaactgagattatatcaacaccatcactaatggcttgat |
214 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| ||||| | ||||| ||||||| | ||||| || || | |||| |||| || ||| ||||||| |
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|
| T |
31146338 |
cctattgaaatctcatcagtaaaaataacttcaggatttgtattaggtttgcctccagccgaaacagaaatcaaatcagcaccgtcgtaaattgcttgat |
31146437 |
T |
|
| Q |
215 |
cgatagcagataatatatcagcaccataacaaactgcactatttccatctgcaattgtttgagaccaacacactttgtaggttacaactcttgattttgg |
314 |
Q |
| |
|
| ||||||| ||||| ||| |||||| | || || || |||| |||| |||||||||| ||||||||||| ||||||||||| |||| |
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|
| T |
31146438 |
caatagcagctaatacatcggcaccaaagcagtctaca------acatc------tgttagagaccaacatgctttgtaggttgcaactcttgatcttgg |
31146525 |
T |
|
| Q |
315 |
tgaaccacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtttccaccagctgttgatagtgtgtgagtaccatggcc |
410 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||||||||| |||| | |||||||||||||||| ||||||||||||||||| || |||||||| |
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|
| T |
31146526 |
tgaaccaccttttatggtaccgttgccaataccaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatggcc |
31146621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 15 - 410
Target Start/End: Original strand, 31164064 - 31164447
Alignment:
| Q |
15 |
gaacacccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagtgaatgcctgaaatgca |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| ||| ||| | ||| ||||||||| |
|
|
| T |
31164064 |
gaacacccatggagcaacattagtaacacttccaggggtaggtccttcatttccagccgatgcaactaataatatatttctagcaagtgcatgaaatgca |
31164163 |
T |
|
| Q |
115 |
cctattgaaatttcatcggtaaaaatttcttcaaaatttgaactaggtcggcctccaacagaaactgagattatatcaacaccatcactaatggcttgat |
214 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| ||||| | ||||| ||||||| | ||||| || || | |||| |||| || ||| ||||||| |
|
|
| T |
31164164 |
cctattgaaatctcatcagtaaaaataacttcaggatttgtattaggtttgcctccagccgaaacagaaatcaaatcagcaccgtcgtaaattgcttgat |
31164263 |
T |
|
| Q |
215 |
cgatagcagataatatatcagcaccataacaaactgcactatttccatctgcaattgtttgagaccaacacactttgtaggttacaactcttgattttgg |
314 |
Q |
| |
|
| ||||||| ||||| ||| ||||| | || || || |||| |||| |||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
31164264 |
caatagcagctaatacatcggcaccgaagcagtctaca------acatc------tgttagagaccaacatgctttgtaggttgcaactcttgatcttgg |
31164351 |
T |
|
| Q |
315 |
tgaaccacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtttccaccagctgttgatagtgtgtgagtaccatggcc |
410 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||||||||| |||| | |||||||||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
31164352 |
tgaaccaccttttatggtaccgttgccaataccaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatggcc |
31164447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 275 - 410
Target Start/End: Complemental strand, 31201519 - 31201384
Alignment:
| Q |
275 |
gagaccaacacactttgtaggttacaactcttgattttggtgaaccacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtt |
374 |
Q |
| |
|
||||||| ||||||||||||||| |||| || | | |||| ||||||||||| | ||||||||||| ||| |||||| |||||| ||||||| ||||| |
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|
| T |
31201519 |
gagaccagcacactttgtaggttgcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtt |
31201420 |
T |
|
| Q |
375 |
tccaccagctgttgatagtgtgtgagtaccatggcc |
410 |
Q |
| |
|
||| |||||||||||||| || |||||||| ||||| |
|
|
| T |
31201419 |
tcccccagctgttgatagagtatgagtaccgtggcc |
31201384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 31201607 - 31201542
Alignment:
| Q |
175 |
gaaactgagattatatcaacaccatcactaatggcttgatcgatagcagataatatatcagcacca |
240 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||||| |
|
|
| T |
31201607 |
gaaagtgagattatatcaacaccatcactaatggcttgatcaatagcagctaatacatcggcacca |
31201542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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