View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18454_high_5 (Length: 388)
Name: NF18454_high_5
Description: NF18454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18454_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 46643021 - 46642649
Alignment:
| Q |
1 |
ttcatattcgctacactcgatggaatacaaccttgtatatcattgttcgcgaacacaacaacagaagctggcatctttccgaaattttctggtaaagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46643021 |
ttcatattcgctacactcgatggaatacaaccttgtatatcattgttcgcgaacacaacaacagaagctggcatctttccgaaattttctggtaaagaaa |
46642922 |
T |
|
| Q |
101 |
atttgaatttgttgttgttgatgaaaagtgcatcaagtttgagatcaaagaggcctttaggaacatttccttgaaaattgttgtatcttatgtctaagta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46642921 |
atttgaatttgttgttgttgatgaaaagtgcatcaagtttgagatcaaagaggcctttaggaacatttccttgaaaattgttgtatcttatgtccaagta |
46642822 |
T |
|
| Q |
201 |
ttttaatgaaggaatgcaaagaacaacctccggaaatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaacta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46642821 |
ttttaatgaaggaatgcaaagaacaacctccgggaatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaacta |
46642722 |
T |
|
| Q |
301 |
ttggggagtgaaccatagaaacggtttgagtttatgtggaaaagagctaagtctgttaaaagaccaagttctt |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46642721 |
ttggggagtgaaccatagaaacggtttgagtttatgtggaaaagagctatgtctgttaaaagaccaagttctt |
46642649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 235 - 373
Target Start/End: Complemental strand, 46640495 - 46640357
Alignment:
| Q |
235 |
aatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagttta |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46640495 |
aatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagttta |
46640396 |
T |
|
| Q |
335 |
tgtggaaaagagctaagtctgttaaaagaccaagttctt |
373 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46640395 |
tgtggaaaagagctatgtctgttaaaagaccaagttctt |
46640357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University