View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18454_high_6 (Length: 338)
Name: NF18454_high_6
Description: NF18454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18454_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 43876641 - 43876962
Alignment:
| Q |
1 |
tgaacatacgcaattgaagaaactgattcagagtaccgtgaattgatatgaatttcaggctttgaagagttctttgggtgatatgacacaaagggaattt |
100 |
Q |
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| T |
43876641 |
tgaacatacacaattgaagaaactgattcagagtaccgtgaattgatatgaatttcaggctttgaagagttctttgggtgatatgacacaaagggaattt |
43876740 |
T |
|
| Q |
101 |
ctttgaaatgtatctttgtggaaatcttaggttgcttgtcccactaggaacctagtaatgaatcccccatctggtataaagattacagtacccagagaat |
200 |
Q |
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| T |
43876741 |
ctttgaaatgtatctttgtggaaatcttaggttgcttgtcccactaggaacctagtaatgaatcccccatctggtataaagattacagtacccagagaat |
43876840 |
T |
|
| Q |
201 |
tgggtagtccaaaggacattttcaatggaattgatagagttgggcatgtagtaaacactcaatgtgaggtggaaggtatggagatcattggacttaaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43876841 |
tgggtagtccaaaggacattttcaatggaattgatagagttgggcatgtagtaaacactcaatgtgaggtggaaggtatggagatcattggacttaaact |
43876940 |
T |
|
| Q |
301 |
ctctttgtaatttgcatgttat |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
43876941 |
ctctttgtaatttgcatgttat |
43876962 |
T |
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