View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18454_low_12 (Length: 304)
Name: NF18454_low_12
Description: NF18454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18454_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 3 - 295
Target Start/End: Complemental strand, 3337642 - 3337350
Alignment:
| Q |
3 |
tatcaagttttgtgtgcagatataaattatgggttattcctgatgatataattagcagtgctatataccacgatgaaaattatcccgaagggaatgcgaa |
102 |
Q |
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| T |
3337642 |
tatcaagttttgtgtgcagatataaattatgggttattcctgatgatataattagcagtgctatataccacgatgaaaattatcccgaagggaatgcgaa |
3337543 |
T |
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| Q |
103 |
acacttctcgtgaaattctcgctatgtgattgttcgctataaacagcatttccctgatagtataatttaagagcaatgctatattaagcgaaaatttgct |
202 |
Q |
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| T |
3337542 |
acacttctcgtgaaactctccctatgtgattgttcgctataaacaacatttccctgatagtataatttaagagcaatgctatattaagcgaaaatttgct |
3337443 |
T |
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| Q |
203 |
tcgcgaatctatcaagaagtgatgtgtaaccgtgtgaaggaatttatagttcggtaaatcatgggaattcatggagttgggtggtcaaagttt |
295 |
Q |
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| T |
3337442 |
tcgcgaatctatcaagaagtgatgggtaaccgtgtgaaggaatttatagttcggtaaatcatgggaattcatggagttgggtggtcaaagttt |
3337350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 173 - 278
Target Start/End: Complemental strand, 53822919 - 53822814
Alignment:
| Q |
173 |
gagcaatgctatattaagcgaaaatttgcttcgcgaatctatcaagaagtgatgtgtaaccgtgtgaaggaatttatagttcggtaaatcatgggaattc |
272 |
Q |
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|||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| |||||| || ||||| ||||||||||||||||| |
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| T |
53822919 |
gagcaatgctatattaagcgaaaacttgcttcacgaatccatcaagaagtgatgtgtaaccgtgtaaaggaacttgcagttctgtaaatcatgggaattc |
53822820 |
T |
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| Q |
273 |
atggag |
278 |
Q |
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|||||| |
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| T |
53822819 |
atggag |
53822814 |
T |
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