View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18454_low_14 (Length: 239)
Name: NF18454_low_14
Description: NF18454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18454_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 20596293 - 20596497
Alignment:
| Q |
14 |
gtgggaagaagggttcatgtgagagtcagatgcactgtgtaaaaataccaggtgagaaaacatggcaattgaggaggataaagggtaaacacacttgcaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20596293 |
gtgggaagaagggttcatgtgagagtcagatgcactgtgtaaaaataccaggtgaggaaacatggcaattgaggaggataaagggtaaacacacttgcag |
20596392 |
T |
|
| Q |
114 |
tagggagtacaagctaaggataatgaactcagattggttgggtgataggctgcattcaagggtgaaggagaatccaaacttgcaattaaagactattgtg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||||||| |
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| T |
20596393 |
tagggagtacaagctaaggataatgaactcagattggttgggtgataagctgcattcaagggtgaaaaagaattcaaacttgcagttaaagactattgtg |
20596492 |
T |
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| Q |
214 |
actag |
218 |
Q |
| |
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||||| |
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| T |
20596493 |
actag |
20596497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 8697294 - 8697498
Alignment:
| Q |
14 |
gtgggaagaagggttcatgtgagagtcagatgcactgtgtaaaaataccaggtgagaaaacatggcaattgaggaggataaagggtaaacacacttgcaa |
113 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8697294 |
gtgggaagaagggttcatgtgagagtcaaatgcactgtgtaaaaataccagatgaggaaacatggcaattgaggaggataaagggtaaacacacttgcag |
8697393 |
T |
|
| Q |
114 |
tagggagtacaagctaaggataatgaactcagattggttgggtgataggctgcattcaagggtgaaggagaatccaaacttgcaattaaagactattgtg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||||| |
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| T |
8697394 |
tagggagtacaagctaaggataatgaactcagattggttaggtgataagctgcattcaagggtgaaagagaatccaagcttgcagttaaagactattgtg |
8697493 |
T |
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| Q |
214 |
actag |
218 |
Q |
| |
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||||| |
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| T |
8697494 |
actag |
8697498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 23330698 - 23330837
Alignment:
| Q |
49 |
tgtgtaaaaataccaggtgagaaaacatggcaattgaggaggataaagggtaaacacacttgcaatagggagtacaagctaaggataatgaactcagatt |
148 |
Q |
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|||||||| |||||| ||| |||||||||||||||||||||||||||| ||||| | |||| ||| | | ||| | ||||| ||||| ||||| | |
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| T |
23330698 |
tgtgtaaagataccaaatgaagaaacatggcaattgaggaggataaagggaaaacatagctgcactagagcatttaaggtcaggatgatgaattcagaat |
23330797 |
T |
|
| Q |
149 |
ggttgggtgataggctgcattcaagggtgaaggagaatcc |
188 |
Q |
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||||||||| || ||| ||||||||||||||||| ||||| |
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| T |
23330798 |
ggttgggtggtaagctacattcaagggtgaaggacaatcc |
23330837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 20622315 - 20622454
Alignment:
| Q |
49 |
tgtgtaaaaataccaggtgagaaaacatggcaattgaggaggataaagggtaaacacacttgcaatagggagtacaagctaaggataatgaactcagatt |
148 |
Q |
| |
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|||||||| |||||| ||| |||||||||||||||||||||||||||| ||||| | |||| ||| | | ||| | ||||| ||||| |||| | |
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| T |
20622315 |
tgtgtaaagataccaaatgaagaaacatggcaattgaggaggataaagggaaaacatagctgcactagagcatttaaggtcaggatgatgaattcagcat |
20622414 |
T |
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| Q |
149 |
ggttgggtgataggctgcattcaagggtgaaggagaatcc |
188 |
Q |
| |
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||||||||| || ||| ||||||||||||||||| ||||| |
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| T |
20622415 |
ggttgggtggtaagctacattcaagggtgaaggacaatcc |
20622454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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