View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18454_low_5 (Length: 415)
Name: NF18454_low_5
Description: NF18454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18454_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 12121759 - 12121375
Alignment:
| Q |
18 |
agaaagagtgattatcactggtaaagatctcgtgaaagattgcactgatgtagggaacaaatgacaggaaatgtaagtgtaaagttccgcgatgtatatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12121759 |
agaaagagtgattatcactggtaaagctctcgtgaaagattgcactgatgtagggaacaaatgacaggaaatgtaagtgtaaaattccgcgatgtatatt |
12121660 |
T |
|
| Q |
118 |
agcggaagattt--ctttaagcagatagatggatagataaatagatttggtttatgttgcagttagctcaaatttgatgctgatgagttaaacaaagctt |
215 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12121659 |
agcggaagatttttctttaagcagatagatggatagataaatagatatggttaatgttgcaattagctcaaatttgatgctgatgagttaaacaaagctt |
12121560 |
T |
|
| Q |
216 |
tatttttcttgttctttgactaataagacgactactttgtaaggtcttttgagactgtttacagagtttcaaatgatgctttgatttcaatttggattta |
315 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||||||| ||| |
|
|
| T |
12121559 |
tatttttcatgttctttgactaataagatgactactttgtaaggtctttt-tgactgtttacagagtttcaaaggatgttttaatttcaatttgga-tta |
12121462 |
T |
|
| Q |
316 |
ctagaaagta----tgcctaaatgtggttattttagtttggatctatacttgttagtagctgttatgtattttacctttgatgtgtgatgat |
403 |
Q |
| |
|
|||||||||| || |||| |||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12121461 |
ctagaaagtatgtttggttaaacgtgg-----ttactttggatctatacttgttagtagctgttatctattttacctttgatgtgtgatgat |
12121375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 147 - 304
Target Start/End: Original strand, 14670021 - 14670180
Alignment:
| Q |
147 |
gatagataaatagatttggtttatgttgcagttagctcaaatttgatgctgatgagttaaacaaagctttatttttcttgttctttgactaataagacga |
246 |
Q |
| |
|
|||||||| ||| ||| ||| ||||||||| | ||||||| |||||| || ||| ||||||||||||||||||||| |||| ||||||| ||||| || |
|
|
| T |
14670021 |
gatagatagatatattcggtatatgttgcaatcagctcaagtttgattttgttgacttaaacaaagctttatttttcatgttatttgacttataagttga |
14670120 |
T |
|
| Q |
247 |
ct-actttgtaaggtcttttgagactg-tttacagagtttcaaatgatgctttgatttca |
304 |
Q |
| |
|
| | ||| |||||||||| || |||| ||| || ||||||||||||||||| |||||| |
|
|
| T |
14670121 |
ttgattttataaggtctttcgacactgttttgcattgtttcaaatgatgctttaatttca |
14670180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 313
Target Start/End: Complemental strand, 14643252 - 14643107
Alignment:
| Q |
171 |
gttgcagttagctcaaatttgatgctgatgagttaaacaaagctttatttttcttgttctttgactaataagacgact-actttgtaaggtcttttgaga |
269 |
Q |
| |
|
|||||| | ||||||| |||||| || ||| || ||| |||||||||||||| |||| ||||||| ||||| |||| | |||||||||||||| || | |
|
|
| T |
14643252 |
gttgcaatcagctcaagtttgattttgttgacttgaacgaagctttatttttcatgttatttgacttataagttgactgattttgtaaggtctttcgaca |
14643153 |
T |
|
| Q |
270 |
ctg-tttacagagtttcaaatgatgctttgatttcaa-tttggatt |
313 |
Q |
| |
|
||| ||| || ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
14643152 |
ctgttttgcattgtttcaaatgatgctttaatttcaagtttggatt |
14643107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 14691146 - 14691093
Alignment:
| Q |
255 |
taaggtcttttgagactgtttacagagtttcaaatgatgctttgatttcaattt |
308 |
Q |
| |
|
||||||||||||| | |||||||||||||| |||||||||| |||||||||| |
|
|
| T |
14691146 |
taaggtcttttgaaaagttttacagagtttcagatgatgctttaatttcaattt |
14691093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University