View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18455_low_1 (Length: 495)
Name: NF18455_low_1
Description: NF18455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18455_low_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Original strand, 31640740 - 31641219
Alignment:
| Q |
18 |
ggatttgggcgagagcccatgagta---cggttctacttggatgtatagaaagactatgggtccctcaaagtcaaacacctaacatgagcgtgagcgtga |
114 |
Q |
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| T |
31640740 |
ggatttgggcgagagcccacgagtagtacggttctacttcgatgtat-gaaagactatgggtccctcaaagtcaaacacctaacatgagcgtgagcatga |
31640838 |
T |
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| Q |
115 |
gagtgtaaattgactaagcatattaaatgtatgtatagaccaaaaatagaaaacgacaacatataaggaaggaacagtgctacgtatgaaaacaaaaaca |
214 |
Q |
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| T |
31640839 |
gagtgtaaattgactaagcatattaaatgtatgtatagaccaaaaatagaaaacgacaacatataaggaaggaacagtgctacgtatgaaaacaaaaaca |
31640938 |
T |
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| Q |
215 |
gtactccatgtcaagaaaggtacataaaatttaaaattcatgaaactgaaaatgagatatacatgaaattgaaacggggtaaaatttaaaatacaagtac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31640939 |
gtactccatgtcaagaaaggtacataaaatttaaaattcatgaaactgaaaatgagatatacatgaaattgaaacggggtaaaatttaaaatacaagtac |
31641038 |
T |
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| Q |
315 |
ttgatgacatttttgtctaaataaaaacaaaaacagtactccatgatccatgacaagaaggtatataagagaaacaatgctaaagatgaattgaatggcc |
414 |
Q |
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| T |
31641039 |
ttgatgacatttttgtctaaataaaaacaaaaacagtactccatgatccatgacaagaaggtatataagagaaacaatgctaaagatgaattgaatggcc |
31641138 |
T |
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| Q |
415 |
aaatatacccatggtaattttggtctctaacagttcccccacgactcaggaacagttgttgtcccaagaaaaccaaaacct |
495 |
Q |
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| T |
31641139 |
aaatatacccatggtaattttggtgtctaacagttcccccacgactcaggaacagttgttgtcccaagaaaaccaaaacct |
31641219 |
T |
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