View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18455_low_2 (Length: 451)
Name: NF18455_low_2
Description: NF18455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18455_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 7875315 - 7874876
Alignment:
| Q |
1 |
atcaaattcaaggcatgattggtcttaactcgcgacacatcggaactaaaactattgtccaatgatccaagagacatgttagtaagatccattggcaagt |
100 |
Q |
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| T |
7875315 |
atcaaattcaaggcatgattggtcttaactcgcgacacatcggaactaaaactattgtccaatgatccaagagacatgttagtaagatccattggcaagt |
7875216 |
T |
|
| Q |
101 |
tcagatcattgaaataacttcccaaactcttaatggaggtgattgaagcatccaacaacataaaatcttctgtatgtctacttggatcaggaatggtgac |
200 |
Q |
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| T |
7875215 |
ttagatcattgaaataacttcccaaactcttaatggaggtgattgaagcatccaacaacataaaatcttctgtatgtctacttggatcaggaatggtgac |
7875116 |
T |
|
| Q |
201 |
accattatttttgcaccactttgatattaagtctttcatgacaatatttggagtcaatgtcatatgaggcagttccttttctgtttttggacatatagtt |
300 |
Q |
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| T |
7875115 |
accattatttttgcaccactttgatatcaagtctttcatgacaatatttggagtcaatgtcatatgaggcagttccttttctgtttttggacatatagtt |
7875016 |
T |
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| Q |
301 |
ttaccctcattaatccactttcttatccacattctttcatatgttactccagaagcaatgataacaggatcatacatcagccttgaggatagtggacact |
400 |
Q |
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| T |
7875015 |
ttaccctcattaatccactttcttatccacattctttcatatgttactccagaagcaatgataacaggatcatgcatcagccttgaggatattggacact |
7874916 |
T |
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| Q |
401 |
tgtatgcctcaggtggtgccactctatcttactgattcat |
440 |
Q |
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| T |
7874915 |
tgtattcctcaggtggtgccactctatctgactgattcat |
7874876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 384
Target Start/End: Original strand, 32838122 - 32838328
Alignment:
| Q |
178 |
ctacttggatcaggaatggtgacaccattatttttgcaccactttgatattaagtctttcatgacaatatttggagtcaatgtcatatgaggcagttcct |
277 |
Q |
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|||||||||| |||||||| ||| ||||| |||||||||| ||||||||||| || || | ||| || ||||||| | || ||| |||||| || |
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| T |
32838122 |
ctacttggattaggaatggagacgtcattagttttgcaccattttgatattaattcctttaaagcaacgttaggagtcatcgccaaatgcagcagtttct |
32838221 |
T |
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| Q |
278 |
tttctgtttttggacatatagttttaccctcattaatccactttcttatccacattctttcatatgttactccagaagcaatgataacaggatcatacat |
377 |
Q |
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||| ||||| || |||||| |||||||||| || ||| ||| ||||||||| | || |||||| |||| |||||||||| ||||||||||||||| |
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| T |
32838222 |
ttttagttttcgggcatataacattaccctcatcaaaccatttttgtatccacatccgctcgtatgtttctcctgaagcaatgacaacaggatcatacat |
32838321 |
T |
|
| Q |
378 |
cagcctt |
384 |
Q |
| |
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|| |||| |
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| T |
32838322 |
caacctt |
32838328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 377
Target Start/End: Original strand, 34511494 - 34511536
Alignment:
| Q |
335 |
tttcatatgttactccagaagcaatgataacaggatcatacat |
377 |
Q |
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| T |
34511494 |
tttcatatgtttgcccagaagcaatgataacaggatcatacat |
34511536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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