View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18455_low_3 (Length: 396)
Name: NF18455_low_3
Description: NF18455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18455_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 31641245 - 31641633
Alignment:
| Q |
1 |
tcatcatgttttgatgaggttggtgttggtggtattctacaccccccgtgaatgttagcatatcctttacatccaaggagtcaccaccatttcctccacc |
100 |
Q |
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| T |
31641245 |
tcatcatgttttgatgaggttggtgttggtggtattctacaccccccgtgaatgttagcatatcctttacatccaaggagtcaccaccatttcctccacc |
31641344 |
T |
|
| Q |
101 |
gttggtaaggccaagaaagtccctagtgagaccatcgtcgttctttccggtgagacagcctctcatgttgttaatgtagtgatcaactgagtctagctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31641345 |
gttggtaaggccaagaaagtccctagtgagaccatcgtcgttctttccggtgagacagcctctcatgttgttaatgtagtgatcaactgagtctagctga |
31641444 |
T |
|
| Q |
201 |
gtcactgatccaaactggccaatgctgagctgagaagtttgatggtgactcattgttggttggcttcctgtgatggcggccgcaccgacggttgctgctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31641445 |
gtcactgatccaaactggccaatgctgagctgagaggtttgatggtgactcattgttggttggcttcctgtgatggcggccgcaccgacggttgctgctt |
31641544 |
T |
|
| Q |
301 |
tttggagaagtgcagttgctgagaggtgtggtgacatggcagcactggaagaaggttgttgtgtgctgacgtggaagggtgatgatgtc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31641545 |
tttggagaagtgcagttgctgagaggtgtggtgacatggcagcagtggaagaaggttgttgtgtgctgacgtggaagggtgatgatgtc |
31641633 |
T |
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