View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18455_low_8 (Length: 238)
Name: NF18455_low_8
Description: NF18455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18455_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 23852835 - 23852605
Alignment:
| Q |
1 |
tatatccatcctgctcattcacagttcaagtatcttagttatttggaccttagtggaaacaatttcaattcaagtccaataccaaagtttatccattcta |
100 |
Q |
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| T |
23852835 |
tatatccatcctgctcattcacagttcaagtatcttagttatttggaccttagtggaaacaatttcaattcaagtccaataccaaagtttatccattcta |
23852736 |
T |
|
| Q |
101 |
tgaatcagttacaatttctttctctctatgactcccatttgagtggtaagatcccaaataaccttggaaacctcacaaaattgtcctttcttgatctcag |
200 |
Q |
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| T |
23852735 |
tgaatcagttacaatttctttctctctatgactcccatttgagtggtaagatcccaaataaccttggaaacctcacaaaattgtcctttcttgatctcag |
23852636 |
T |
|
| Q |
201 |
tttcaatacttatttacactctgatgatgtc |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23852635 |
tttcaatacttatttacactctgatgatgtc |
23852605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 32 - 230
Target Start/End: Complemental strand, 22619496 - 22619298
Alignment:
| Q |
32 |
atcttagttatttggaccttagtggaaacaatttcaattcaagtccaataccaaagtttatccattctatgaatcagttacaatttctttctctctatga |
131 |
Q |
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|||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||| |||||| ||| ||| |
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| T |
22619496 |
atcttagtaatttagaccttagtggaaacaatttaaattcaagtccaataccaacatttatccatttaatgaatcagttaaaattcctttctatctctga |
22619397 |
T |
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| Q |
132 |
ctcccatttgagtggtaagatcccaaataaccttggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttatttacactctgatgatgt |
230 |
Q |
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| T |
22619396 |
ttccaatttgagtggaataatcccaaataaccttagaaacctcacaaaattgaactttcttgatctcagtttaaattcttatttacactctgatgatgt |
22619298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 32 - 230
Target Start/End: Complemental strand, 23752103 - 23751905
Alignment:
| Q |
32 |
atcttagttatttggaccttagtggaaacaatttcaattcaagtccaataccaaagtttatccattctatgaatcagttacaatttctttctctctatga |
131 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||| |||||| ||| ||| |
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| T |
23752103 |
atcttagtaatttagaccttagtggaaacaatttaaattcaagtccaataccaacatttatccatttaatgaatcagttaaaattcctttctatctctga |
23752004 |
T |
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| Q |
132 |
ctcccatttgagtggtaagatcccaaataaccttggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttatttacactctgatgatgt |
230 |
Q |
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||| |||||||||| | ||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
23752003 |
ttccaatttgagtggaataatcccaaataaccttagaaacctcacaaaattgaactttcttgatctcagtttaaattcttatttacactctgatgatgt |
23751905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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