View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18456_high_1 (Length: 507)
Name: NF18456_high_1
Description: NF18456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18456_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 12 - 491
Target Start/End: Complemental strand, 47827954 - 47827476
Alignment:
| Q |
12 |
atgaacttaaaaagtaattaaattagtattttttaaaaattgaatcgttttaatcggttgaacagtgagttgtaatagtctactattcacttatttgagc |
111 |
Q |
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| T |
47827954 |
atgaacttaaaaagtaattaaattagtattttttaaaaattgaatcgttttaatcggttgaacagtgagttgtcatagtctactattcacttatttgagc |
47827855 |
T |
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| Q |
112 |
agttgaattgcagttttttcttgattcggttagtttaaaagaattgaattatgatccatattcaattttnnnnnnnccaattaatttgatctgttaccat |
211 |
Q |
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| T |
47827854 |
agttgaattgcagttttttcttgattcggttagtttaaaagaattgaattatgatccatattcaatttttaaaaa-ccaattaatttgatctgttaccat |
47827756 |
T |
|
| Q |
212 |
atctaattcgagctacatacgtatatatgatgtagctaagatgattattacttattatagaagaagctataagatataatatatacatacccaggataat |
311 |
Q |
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| T |
47827755 |
atctaattcgagctacatacgtatatatgatgtagctaaaatgattattacttattatacaagaagctataagatataatatatacatacccaggataat |
47827656 |
T |
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| Q |
312 |
agggtgtgggaagaatgaaagcttccccaggatcagcaagacaaaacatgagaatctcatttgcagaagttgcgccagctgcgaggacaagattctctga |
411 |
Q |
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| T |
47827655 |
agggtgtgggaagaatgaaagcttccccaggatcagcaatacaaaacatgagaatctcatttgcagaagttgcgccagctgcgaggacaagattctctga |
47827556 |
T |
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| Q |
412 |
atcaaattttataacatttcctcttatttttgccataaacttcaccagttcctgcaccaataaaaacaagctaaggaatt |
491 |
Q |
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| T |
47827555 |
atcaaattttataacatttcctcttatttttgccataaacttcaccagttcctgcaccaataaaaacaagctaaggaatt |
47827476 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 392
Target Start/End: Original strand, 5135021 - 5135114
Alignment:
| Q |
299 |
tacccaggataatagggtgtgggaagaatgaaagcttccccaggatcagcaagacaaaacatgagaatctcatttgcagaagttgcgccagctg |
392 |
Q |
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| T |
5135021 |
taccctgggtaataaggagtgggaaggagaaaagcttctccttgttcagcaaggcaaaacatgagtgtctcatttgcagaagtggcaccagctg |
5135114 |
T |
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