View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18456_high_3 (Length: 462)

Name: NF18456_high_3
Description: NF18456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18456_high_3
NF18456_high_3
[»] chr8 (2 HSPs)
chr8 (1-376)||(17125984-17126359)
chr8 (244-377)||(24969433-24969566)
[»] chr2 (3 HSPs)
chr2 (126-281)||(27402321-27402477)
chr2 (338-376)||(27402525-27402563)
chr2 (135-180)||(24280237-24280282)
[»] chr3 (5 HSPs)
chr3 (135-372)||(12794002-12794239)
chr3 (135-281)||(15856008-15856147)
chr3 (135-180)||(12774850-12774895)
chr3 (242-287)||(15046531-15046576)
chr3 (135-180)||(17218228-17218273)
[»] chr6 (3 HSPs)
chr6 (132-312)||(14797033-14797207)
chr6 (135-268)||(19978125-19978258)
chr6 (331-373)||(14567802-14567844)
[»] scaffold0959 (1 HSPs)
scaffold0959 (162-366)||(467-661)
[»] scaffold0417 (1 HSPs)
scaffold0417 (132-372)||(2284-2516)
[»] chr1 (3 HSPs)
chr1 (135-233)||(35565280-35565378)
chr1 (228-287)||(30822076-30822135)
chr1 (337-372)||(35565506-35565541)
[»] chr5 (1 HSPs)
chr5 (244-368)||(10178100-10178224)
[»] chr4 (3 HSPs)
chr4 (13-89)||(15693218-15693294)
chr4 (325-366)||(9220680-9220721)
chr4 (135-180)||(21961895-21961940)
[»] chr7 (3 HSPs)
chr7 (125-183)||(20147276-20147335)
chr7 (162-286)||(17162514-17162631)
chr7 (272-376)||(15010343-15010447)
[»] scaffold0135 (1 HSPs)
scaffold0135 (325-366)||(31331-31372)
[»] scaffold0111 (1 HSPs)
scaffold0111 (244-287)||(31561-31604)
[»] scaffold0126 (1 HSPs)
scaffold0126 (135-237)||(17273-17376)


Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 17125984 - 17126359
Alignment:
Q  1 aaactactctaatactaagaacaagcttcaatctaccccttttttatgatgtcaaatacatgttgatgaaaatggatttgactccccctaaatttataca 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  17125984 aaactactctaatactaagaacaagcttcaatctcccccttttttatgatgtcaaatacatgttgatgaaaatggatttggctccccctgaatttataca 17126083  T
Q  101 cacagagaaaatgtgacaccaattgtcgcctcttgatacaattgtatcataatcgtcgtcgttgaatacaaagtattctagtcgtctcctatggatacaa 200  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17126084 cacagagaaaatgtgataccaatcgtcgcctcttgatacaattgtatcataatcgtcgtcgttgaatacaaagtattctagtcgtcacctatggatacaa 17126183  T
Q  201 gatatcctaatcgtcttcattgaataaaaatatcctacttgacacttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgt 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17126184 gatatcctaatcgtcttcattgaataaaaatatcatacttgacacttatgaaggcatgaacatatgactcaataatgcatatgttcacccactaaattgt 17126283  T
Q  301 tatcattaacatcgtcaccttttgtacatacattcgtcatcaatatcgtcgtcattttgcatgtaagaattcgtca 376  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17126284 tatcattaacatcgtcaccttttgtacatgcattcgtcatcaatatcgtcgtcattttgcatgtaagaattcgtca 17126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 377
Target Start/End: Original strand, 24969433 - 24969566
Alignment:
Q  244 acttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaa 343  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||| | |  |||||||  |||||  | || |||  |||  ||||| ||||| ||| |||    
T  24969433 acttatgaatgcatgaacatatgactcaataatgcatacgttcaacaaacaaatcgtcgtcattttcgtcttcatttttcatacatgcattcatcaacaa 24969532  T
Q  344 tatcgtcgtcattttgcatgtaagaattcgtcaa 377  Q
    || |||||||||||||||| ||||||||| ||||    
T  24969533 taacgtcgtcattttgcatataagaattcatcaa 24969566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 126 - 281
Target Start/End: Original strand, 27402321 - 27402477
Alignment:
Q  126 tcgcctcttgatacaattgtatcataatcgtcgtcgtt-gaatacaaagtattctagtcgtctcctatggatacaagatatcctaatcgtcttcattgaa 224  Q
    |||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| ||| |||||||||  |||||||||||||||||||| |    
T  27402321 tcgcctcttgatacaactgtatcataatcgtcgtcatttgaatacaaagtattctagtcgtcgcctctggatacaaagtatcctaatcgtcttcattgga 27402420  T
Q  225 taaaaatatcctacttgacacttacgaaggcatgaacatatgactcaataatgcata 281  Q
    || |||||||||||||||||||||| || |||||||||||||| |||||||||||||    
T  27402421 tataaatatcctacttgacacttactaatgcatgaacatatgattcaataatgcata 27402477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 27402525 - 27402563
Alignment:
Q  338 catcaatatcgtcgtcattttgcatgtaagaattcgtca 376  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  27402525 catcaatatcgtcaccattttgcatgtaagaattcgtca 27402563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 24280237 - 24280282
Alignment:
Q  135 gatacaattgtatcataatcgtcgtcgttgaatacaaagtattcta 180  Q
    ||||||| |||||||||| |  ||||||||||||||||||||||||    
T  24280237 gatacaaatgtatcataaacaccgtcgttgaatacaaagtattcta 24280282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 135 - 372
Target Start/End: Original strand, 12794002 - 12794239
Alignment:
Q  135 gatacaattgtatcataatcgtcgtcgtt--gaatacaaagtattctagtcgtctcctatggatacaagatatcctaatcgtcttcattgaataaaaata 232  Q
    ||||||| ||||||||| |||||||| ||  ||||| ||||||||| ||| |||| |  |||||| || |||||||| |||| ||||||| ||| ||| |    
T  12794002 gatacaaatgtatcatattcgtcgtccttttgaatataaagtattcgagttgtcttcagtggatataa-atatcctagtcgtattcattggatataaaca 12794100  T
Q  233 tcctacttgacacttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacataca 332  Q
    |||||||||||||||| |  | |||||||||||||||||| |||||| ||||||| | || ||||||| ||||||  | |  |||  |||  ||||| ||    
T  12794101 tcctacttgacacttatgttg-catgaacatatgactcaacaatgcacatgttcaacaacaaaatcgtcatcattttcgtattcatttttcatacatgca 12794199  T
Q  333 ttcgtcatcaatatcgtcgtcattttgcatgtaagaattc 372  Q
    ||| |||||||||||||||||||||||||||||| |||||    
T  12794200 ttcatcatcaatatcgtcgtcattttgcatgtaataattc 12794239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 281
Target Start/End: Original strand, 15856008 - 15856147
Alignment:
Q  135 gatacaattgtatcataatcgtcgtcgtt-gaatacaaagtattctagtcgtctcctatggatacaagatatcctaatcgtcttcattgaataaaaatat 233  Q
    ||||||| ||||||||| |||||||| || ||||||||| ||||||||||||||    || ||| || |||||||| |||||||||||| ||| ||||||    
T  15856008 gatacaaatgtatcatagtcgtcgtcatttgaatacaaattattctagtcgtctttgttgaatataa-atatcctagtcgtcttcattggatataaatat 15856106  T
Q  234 cctacttgacacttacgaaggcatgaacatatgactcaataatgcata 281  Q
    |||       ||||||||| |||||||||||| |||||| ||||||||    
T  15856107 cct-------acttacgaatgcatgaacatataactcaacaatgcata 15856147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 12774895 - 12774850
Alignment:
Q  135 gatacaattgtatcataatcgtcgtcgttgaatacaaagtattcta 180  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||    
T  12774895 gatacaattgtatcataaacaccgtcgttgaatacaaagtattcta 12774850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 15046576 - 15046531
Alignment:
Q  242 acacttacgaaggcatgaacatatgactcaataatgcatatgttca 287  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||||||    
T  15046576 acacttatgaatgcatgaacatatgactcaacaatgcatatgttca 15046531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 17218228 - 17218273
Alignment:
Q  135 gatacaattgtatcataatcgtcgtcgttgaatacaaagtattcta 180  Q
    |||||||  |||||||||||  ||||||||||||||||||||||||    
T  17218228 gatacaaccgtatcataatcaccgtcgttgaatacaaagtattcta 17218273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 312
Target Start/End: Original strand, 14797033 - 14797207
Alignment:
Q  132 cttgatacaattgtatcataatcgtcgtcgttgaatacaaagtattctagtcgtctcctatggatacaagatatcctaatcgtcttcattgaataaaaat 231  Q
    |||||||||| | |||||||||| || || ||||||||||| |||| | ||||||  |  |||||||||  |||||||||| || ||| |||||| ||||    
T  14797033 cttgatacaactatatcataatcctcatcattgaatacaaaatattatggtcgtcatcattggatacaaagtatcctaatcatcatcactgaatataaat 14797132  T
Q  232 atcctacttgacacttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacat 312  Q
    ||| |||||      || ||| |||||||||||||||||||||||||||| |||||| ||  || |||| |||||||||||    
T  14797133 atcatactt------tatgaatgcatgaacatatgactcaataatgcatacgttcacacaacaagtcgtcatcattaacat 14797207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 268
Target Start/End: Complemental strand, 19978258 - 19978125
Alignment:
Q  135 gatacaattgtatcataatcgtcgtcgtt--gaatacaaagtattctagtcgtctcctatggatacaagatatcctaatcgtcttcattgaataaaaata 232  Q
    ||||||| ||||||||| |||||||||||  ||||| |||| ||||  ||| ||| |  |||||| || |||||||| |||||||||||| ||| |||||    
T  19978258 gatacaaatgtatcatagtcgtcgtcgttttgaataaaaagcattcgggtcttcttcgttggatataa-atatcctagtcgtcttcattggatataaata 19978160  T
Q  233 tcctacttgacacttacgaaggcatgaacatatgac 268  Q
    ||||||||| ||||| || | |||||||||||||||    
T  19978159 tcctacttgtcacttccg-atgcatgaacatatgac 19978125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 373
Target Start/End: Complemental strand, 14567844 - 14567802
Alignment:
Q  331 cattcgtcatcaatatcgtcgtcattttgcatgtaagaattcg 373  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||    
T  14567844 cattcgtcatcaatatcatcgtcattttgcacgtaataattcg 14567802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 162 - 366
Target Start/End: Original strand, 467 - 661
Alignment:
Q  162 ttgaatacaaagtattctagtcgtctcctatggatacaagatatcctaatcgtcttcattgaataaaaatatcctacttgacacttacgaaggcatgaac 261  Q
    |||||||||||||||| ||||||||| |  |||||| ||  ||||||| |||||||||||| ||| ||||||| |||||       | ||| |||||||     
T  467 ttgaatacaaagtattatagtcgtcttcgttggatataa--tatcctagtcgtcttcattggatataaatatcatactt-------atgaatgcatgaat 557  T
Q  262 atatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaatatcgtcgtcattttgca 361  Q
    ||| ||||||| |||||||| ||||| | | |||||||| |||||| || || |||  |||  ||||| ||||| ||||||| | |||||||||||||||    
T  558 ataagactcaacaatgcataagttcaacaa-taaatcgtcatcatttacgtcttcatttttcatacatgcattcatcatcaacaacgtcgtcattttgca 656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 372
Target Start/End: Original strand, 2284 - 2516
Alignment:
Q  132 cttgatacaattgtatcataatcgtcgtcgttgaatacaaagtattctagtcgtctcctatggatacaagatatcctaatcgtcttcattgaataaaaat 231  Q
    |||||| ||| |||||||||||| ||||||||||||||| |||||||||||| ||  |  |||||||||| ||||||| || || |  ||| ||| ||||    
T  2284 cttgatgcaactgtatcataatcatcgtcgttgaatacatagtattctagtcatcgtcgttggatacaag-tatcctagtcatcatagttggatataaat 2382  T
Q  232 atcctacttgacacttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatac 331  Q
    |||||       ||||| |||  |||||||||||||||||||||||||| || |||  ||  ||||| | ||| | | ||| ||||| |||  |||||      
T  2383 atcct-------acttatgaatacatgaacatatgactcaataatgcatgtggtcattcaacaaatcatcatcttgatcattgtcacttttcatacatgt 2475  T
Q  332 attcgtcatcaatatcgtcgtcattttgcatgtaagaattc 372  Q
      || ||||||| ||| ||||||||||||||||||||||||    
T  2476 ggtcatcatcaaaatcatcgtcattttgcatgtaagaattc 2516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 35565280 - 35565378
Alignment:
Q  135 gatacaattgtatcataatcgtcgtcgtt--gaatacaaagtattctagtcgtctcctatggatacaagatatcctaatcgtcttcattgaataaaaata 232  Q
    ||||||| |||||| ||||||||||| ||  |||||||||||||||  ||||||| |  |||||| || ||||||||||||||||||||||||| |||||    
T  35565280 gatacaaatgtatcttaatcgtcgtcattttgaatacaaagtattcg-gtcgtcttccttggatataa-atatcctaatcgtcttcattgaatataaata 35565377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 30822076 - 30822135
Alignment:
Q  228 aaatatcctacttgacacttacgaaggcatgaacatatgactcaataatgcatatgttca 287  Q
    |||||||| |||  ||| ||| ||| |||||||||||||||||||||||||||| |||||    
T  30822076 aaatatccgactcaacatttatgaatgcatgaacatatgactcaataatgcatacgttca 30822135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 372
Target Start/End: Original strand, 35565506 - 35565541
Alignment:
Q  337 tcatcaatatcgtcgtcattttgcatgtaagaattc 372  Q
    |||||||||||||||||||||||||||||| |||||    
T  35565506 tcatcaatatcgtcgtcattttgcatgtaataattc 35565541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 368
Target Start/End: Complemental strand, 10178224 - 10178100
Alignment:
Q  244 acttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaa 343  Q
    ||||| ||| ||||||||||||||||||| |||||||| ||||| |    || |||| ||||||  | || |||  |||| ||||| ||||| |||||||    
T  10178224 acttatgaatgcatgaacatatgactcaacaatgcatacgttcaacatacaattcgtcatcattttcgtcttcattttttatacatgcattcatcatcaa 10178125  T
Q  344 tatcgtcgtcattttgcatgtaaga 368  Q
    || | ||||||||||||||||||||    
T  10178124 taacatcgtcattttgcatgtaaga 10178100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 15693294 - 15693218
Alignment:
Q  13 tactaagaacaagcttcaatctaccccttttttatgatgtcaaatacatgttgatgaaaatggatttgactccccct 89  Q
    |||||||| |||||||||||||  |||||||| || || ||||| ||||||||||||| |||||| |||| ||||||    
T  15693294 tactaagagcaagcttcaatctctccctttttgataatatcaaacacatgttgatgaagatggatatgacaccccct 15693218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 366
Target Start/End: Original strand, 9220680 - 9220721
Alignment:
Q  325 tacatacattcgtcatcaatatcgtcgtcattttgcatgtaa 366  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  9220680 tacatgcattcgtcatcaataacgtcgtcattttgcatgtaa 9220721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 21961895 - 21961940
Alignment:
Q  135 gatacaattgtatcataatcgtcgtcgttgaatacaaagtattcta 180  Q
    ||||||| |||||||||| |  ||||||||||||||||||||||||    
T  21961895 gatacaaatgtatcataaacaccgtcgttgaatacaaagtattcta 21961940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 20147276 - 20147335
Alignment:
Q  125 gtcgcctcttgatacaattgtatcataatcgtcgtc-gttgaatacaaagtattctagtc 183  Q
    ||||||||||||||||| ||||||| |||||||| |  ||||||||||||||||||||||    
T  20147276 gtcgcctcttgatacaactgtatcaaaatcgtcgcctcttgaatacaaagtattctagtc 20147335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 17162631 - 17162514
Alignment:
Q  162 ttgaatacaaagtattctagtcgtctcctatggatacaagatatcctaatcgtcttcattgaataaaaatatcctacttgacacttacgaaggcatgaac 261  Q
    |||||||||||||||||  ||||||  |  |||||||||  |||| ||||||||||||||| ||| |||||| ||       ||||| ||| |||||| |    
T  17162631 ttgaatacaaagtattcgggtcgtcaacactggatacaaagtatcataatcgtcttcattggatataaatattct-------acttatgaatgcatgagc 17162539  T
Q  262 atatgactcaataatgcatatgttc 286  Q
    |||||||||||||||||||| ||||    
T  17162538 atatgactcaataatgcataagttc 17162514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 376
Target Start/End: Complemental strand, 15010447 - 15010343
Alignment:
Q  272 ataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaatatcgtcgtcattttgcatgtaagaatt 371  Q
    |||||||||  ||||||| |  ||||| | ||||||||||||||||| || | || ||   ||| |||||||||||||||||  ||||||||||| || |    
T  15010447 ataatgcatccgttcacctaacaaatcatcatcattaacatcgtcactttctataaatgtgttcatcatcaatatcgtcgtctctttgcatgtaataact 15010348  T
Q  372 cgtca 376  Q
    |||||    
T  15010347 cgtca 15010343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 366
Target Start/End: Original strand, 31331 - 31372
Alignment:
Q  325 tacatacattcgtcatcaatatcgtcgtcattttgcatgtaa 366  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  31331 tacatgcattcgtcatcaataacgtcgtcattttgcatgtaa 31372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 31604 - 31561
Alignment:
Q  244 acttacgaaggcatgaacatatgactcaataatgcatatgttca 287  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||    
T  31604 acttatgaatgcatgaacatatgactcaataatgcatacgttca 31561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 17376 - 17273
Alignment:
Q  135 gatacaattgtatcataatcgtcgtcgtt--gaatacaaagtattctagtcgtctcctatggatacaagatatcctaatcgtcttcattgaataaaaata 232  Q
    ||||||| |||||||||||  ||||| ||  ||||| |||||||||  ||||||| |  |||||| || ||||||||||||||||||||  ||| |||||    
T  17376 gatacaaatgtatcataatattcgtcattttgaataaaaagtattcgggtcgtcttccttggatataa-atatcctaatcgtcttcatttgatataaata 17278  T
Q  233 tccta 237  Q
    |||||    
T  17277 tccta 17273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University