View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18456_high_8 (Length: 225)
Name: NF18456_high_8
Description: NF18456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18456_high_8 |
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| [»] scaffold0024 (1 HSPs) |
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| [»] scaffold1049 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 13895 - 13693
Alignment:
| Q |
7 |
aggagcagagaaagagaggtgcagatctttaaagaggtacattagccattgcagttcacatgtaaggcttgctaatgcacgatattcagcttctgagctt |
106 |
Q |
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| T |
13895 |
aggagaagagaaagagaggtgcagatctttaaagaggtacattagccattgcagttcacatgtaaggcttgctaatgcgcgatattcagcttctgagctt |
13796 |
T |
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| Q |
107 |
gatttggagacgattgactgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacccgttacagatttcctggttgtaggacaag |
206 |
Q |
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| T |
13795 |
gatttggagacgatcgactgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacccgttacagatttcctggttgtaggacaag |
13696 |
T |
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| Q |
207 |
ttg |
209 |
Q |
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||| |
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| T |
13695 |
ttg |
13693 |
T |
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Target: scaffold1049 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1049
Description:
Target: scaffold1049; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 413 - 465
Alignment:
| Q |
125 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc |
177 |
Q |
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| T |
413 |
tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc |
465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 26083297 - 26083349
Alignment:
| Q |
125 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc |
177 |
Q |
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| T |
26083297 |
tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc |
26083349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 26107084 - 26107136
Alignment:
| Q |
125 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc |
177 |
Q |
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| T |
26107084 |
tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc |
26107136 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 4502355 - 4502303
Alignment:
| Q |
125 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc |
177 |
Q |
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|||||||| || |||||||| ||||| ||||| ||||||||||||||| |||| |
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| T |
4502355 |
tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc |
4502303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 15825907 - 15825855
Alignment:
| Q |
125 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc |
177 |
Q |
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|||||||| || |||||||| ||||| ||||| ||||||||||||||| |||| |
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| T |
15825907 |
tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc |
15825855 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 548886 - 548938
Alignment:
| Q |
125 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc |
177 |
Q |
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|||||||| || |||||||| ||||| ||||| ||||||||||||||| |||| |
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| T |
548886 |
tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc |
548938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 30279298 - 30279350
Alignment:
| Q |
125 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc |
177 |
Q |
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| T |
30279298 |
tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc |
30279350 |
T |
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