View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18456_low_12 (Length: 220)
Name: NF18456_low_12
Description: NF18456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18456_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 1202234 - 1202423
Alignment:
| Q |
18 |
acatagccattgcaaaactacacatactcttggggaaataacagtagaaaaactcaaccagtccaactggtgtgaaagactcggcgaaaccaaacaaaac |
117 |
Q |
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| T |
1202234 |
acatagccattgcaaaactacacatactcttggggaaataacagtagaaaaactcaaccagtccaactggtgtgaaagactcggcgaaaccaaacaaaac |
1202333 |
T |
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| Q |
118 |
aaactcgggaacaagccataaagccgacatatgttaattacagcagtaggttggtcctcaaacccttgttcgatcgctgcatttcatctcac |
209 |
Q |
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| T |
1202334 |
aaactcgggaacaagccataaagccgac--atgttaattacagaagtaggttggtcctcaaacccttgttcgatcgctgcatttcgtctcac |
1202423 |
T |
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Target: chr1; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 1223609 - 1223420
Alignment:
| Q |
18 |
acatagccattgcaaaactacacatactcttggggaaataacagtagaaaaactcaaccagtccaactggtgtgaaagactcggcgaaaccaaacaaaac |
117 |
Q |
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|||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
1223609 |
acatagccattgcaaaactagacatactcttagggaaaaaacagtagaaaaactcaaccagtccaactggtgtgaaagcttcggcgaatccaaacaaaat |
1223510 |
T |
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| Q |
118 |
aaactcgggaacaagccataaagccgacatatgttaattacagcagtaggttggtcctcaaacccttgttcgatcgctgcatttcatctcac |
209 |
Q |
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|||||| ||| ||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
1223509 |
aaactctggagcaagccataaagccgac--atgttaatttcagcattaggttggtcctcaaacccttgttcaatcgctgcatttcgtctcac |
1223420 |
T |
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