View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18456_low_2 (Length: 486)
Name: NF18456_low_2
Description: NF18456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18456_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 140 - 469
Target Start/End: Original strand, 41180324 - 41180665
Alignment:
| Q |
140 |
tataatgtacataaatgcagtaaatatgtctcttctgctctttgttcactataatgcctacctcatttt-cgatctaactttatccgtatatcaaagttt |
238 |
Q |
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| T |
41180324 |
tataatgtacataaatacagtaaatatgtttcttctactctttgtcaactataatgcccacattatttttcgatctaactttatccatatatcaaagttt |
41180423 |
T |
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| Q |
239 |
aatattcttaagtgtttaattttgtttcccta----------agttactttctagtagacacatcaaatcagtcattctcctaatcaaagcgtctactat |
328 |
Q |
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| T |
41180424 |
aatgctct-aactgtttaattttgtttccctttcatccacccagttactttctagtagacacatcaaatcagtcattctcctaatcaaagcgtctactat |
41180522 |
T |
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| Q |
329 |
tttcatagatttttctgtaagagtgcttat--tctttatactcttgtgaactaacttctttcccacatggaattccttggaagatgagagtcagatggct |
426 |
Q |
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| T |
41180523 |
cttcatagatttttctgtaagagcgcttatattctttatactcttgtgaactaacttctttcccacatgaaattccttggaagatgagagccagatggct |
41180622 |
T |
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| Q |
427 |
caactgcatgaagttttgctctagtattgactgctcctgcttg |
469 |
Q |
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| T |
41180623 |
caattgcatgaagttttgctctagtattgactgctcatgcttg |
41180665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 41180131 - 41180192
Alignment:
| Q |
80 |
gccggtagttgtatattagctagattttgtttgtttgttttcgaccacaacacaaacatata |
141 |
Q |
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| T |
41180131 |
gccggtagttgtatattagctagattttgtttgtttgttttggaccacaacacaaacatata |
41180192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 12180036 - 12180084
Alignment:
| Q |
400 |
tccttggaagatgagagtcagatggctcaactgcatgaagttttgctct |
448 |
Q |
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| T |
12180036 |
tccttggaagatgagagccagatggttcaattgcttaaagttttgctct |
12180084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 12181612 - 12181660
Alignment:
| Q |
400 |
tccttggaagatgagagtcagatggctcaactgcatgaagttttgctct |
448 |
Q |
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| T |
12181612 |
tccttggaagatgagagccagatggttcaattgcttaaagttttgctct |
12181660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 14232576 - 14232624
Alignment:
| Q |
400 |
tccttggaagatgagagtcagatggctcaactgcatgaagttttgctct |
448 |
Q |
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| T |
14232576 |
tccttggaagatgagagccagatggttcaattgcttaaagttttgctct |
14232624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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