View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18456_low_3 (Length: 467)
Name: NF18456_low_3
Description: NF18456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18456_low_3 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 137 - 467
Target Start/End: Complemental strand, 56312712 - 56312382
Alignment:
| Q |
137 |
atgaattagagcagtagtatttggtaattaaggagaagtaattattatataccttttgatatcgttcggtttcatgttggggtaatctatactcattcat |
236 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56312712 |
atgaattagagcagtaatatttggtaattaaggagaagtaattattatataccttttgatatcgttcggtttcatgttggggtaatctatactcattcat |
56312613 |
T |
|
| Q |
237 |
aatccaactggttcggatgcctttaggagcttttccagaatagaaaactagggttttcttgagtccaattgaacggaagttttcagttcgaatcatccta |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56312612 |
aatccaactggttcggatgcctttaggagcttttccagaatagaaaactagggttttcttgagtccaattgaacggaagttttcagttcgaatcatccta |
56312513 |
T |
|
| Q |
337 |
tctgctcctgttgccttccaataaccagaagttgttacacgatttggacgatcaccgtttcgatacttcctatctcgaggcacataaaagtaccactcct |
436 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56312512 |
tccgctcctgttgccttccaataaccagaagttgttacacgatttggacgatcaccgtttcgatacttcctatctcgaggcacataaaagtaccactcct |
56312413 |
T |
|
| Q |
437 |
tctctccgattgctgccaaagctgctcatca |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
56312412 |
tctctccgattgctgccaaagctgctcatca |
56312382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 56312877 - 56312756
Alignment:
| Q |
1 |
ctatatatttatggattctgaaaaaagacgactcaaaatcaagatgcataatatataatatagctctttaaaactagggttgannnnnnnnaaaaccaac |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
56312877 |
ctatatatttatggattctgaaaaa-gacgacccaaaatcaagatgcataatatataatatagctctttaaaactagggttga-tttttttaaaaccaac |
56312780 |
T |
|
| Q |
101 |
aaatacacggtttcaatatattca |
124 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
56312779 |
aaagacacggtttcaatatattca |
56312756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University