View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18456_low_5 (Length: 394)
Name: NF18456_low_5
Description: NF18456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18456_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 378
Target Start/End: Original strand, 25406307 - 25406672
Alignment:
| Q |
13 |
aatatagagggtctatatcagaatttcgtgcaaaccgccatttttgtcactgaatttgcattttctctgctattttgtctattgaagtaaatgataataa |
112 |
Q |
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| T |
25406307 |
aatatagagggtctatatcagaatttcgtgcaaaccgccatttttgtcactgaatttgcattctctctgctattttgtctattgaagtaaatgataataa |
25406406 |
T |
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| Q |
113 |
ttagtccccaacatttgtaatattggtccagttagtccctaacatgttaaatctatcaaattagttacttatgttttgtcagtaaataatagcatggact |
212 |
Q |
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| T |
25406407 |
ttagtccccaacatttgtaatatttgtccagttagtccctaacatgttaaatctatcaaattagttacttatgttttgtcagtaaataatagcatggact |
25406506 |
T |
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| Q |
213 |
aatatggcgagtgtgacaaagtattatggactacttattttcatttactttggagataaactaggagagaatgtgcaaattaaggacggaattgatggtt |
312 |
Q |
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| T |
25406507 |
aatatggcgagtgtgacaaaatattatggactacttattttcatttactttggagataaactaggagagaatgtgcaaattaaggacggaattgatggtt |
25406606 |
T |
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| Q |
313 |
tattctttatttgcaatggtcagcaagcaacaaactcataagtttataactatgcacccaactatt |
378 |
Q |
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| T |
25406607 |
tattctttatttgcaatggtcagcaagcaacaagctcataagtttataaccatgcacccaactatt |
25406672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 210 - 378
Target Start/End: Original strand, 25319551 - 25319716
Alignment:
| Q |
210 |
actaatatggcgagtgtgacaaagtattatggactacttattttcatttactttggagataaactaggagagaatgtgcaaattaaggacggaattgatg |
309 |
Q |
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| T |
25319551 |
actaatatggcaagagtgacaaaatattatggactacttatttccattcacttcggagataaacta--tgagaatgtgcaaattaaggacgcaattgatg |
25319648 |
T |
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| Q |
310 |
gtttattcttt---atttgcaatggtcagcaagcaacaaactcataagtttataactatgcacccaactatt |
378 |
Q |
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| T |
25319649 |
gtttattctttataatttgcaatggtc----agcaacaaactcataagttcataactattcacccaactatt |
25319716 |
T |
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